Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq6932 192 5e-44 seq54289 176 4e-39 seq47026 116 3e-21 seq4418 100 2e-16 seq185772 93.3 4e-14 seq6747 93.3 4e-14 >seq6932 Length=2340 Score = 192 bits (212), Expect = 5e-44 Identities = 435/644 (68%), Gaps = 9/644 (1%) Strand=Plus/Plus Query 102323 TTGGACCACGCGCCCTTAAAATCGTAACTCATGAGGAATATTTTATCAAGGAACCTTTGA 102382 || ||||| || ||||| || || |||||||| | ||| || | ||| | | ||||| Sbjct 725 TTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTTTGA 784 Query 102383 GCCGCGTCGTACTTCACCACGGCAATTTTGTCGTAGCCCGAACTAATCGCGCTCGTCAGC 102442 ||| | |||| | || || ||||| || | || || ||||| || || | Sbjct 785 GCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTTAAT 844 Query 102443 TCGTACGTCTTGTTCGTTTGCAGCTGC-AGTTCGTCCAGCATGGCGCGCAACTCTTTCAG 102501 ||||| |||| | || ||||| || || || ||||| | || || ||||||| Sbjct 845 TCGTATTTCTTAC-CATTCTTAGCTGAGAGCTCATCGAGCATCTCACGTAATTCTTTCAT 903 Query 102502 CAAAACAAGGTACGTGTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGCCCTT 102561 |||| | || || | || || | | | ||||| | ||||| || || || Sbjct 904 CAAACTTACATAACAATCACCATCTT-CTGGGC--TACCGAGATCAGGGTTAGCACCTTT 960 Query 102562 GCCGCCCGGAAACTCCCAATCGATGTCCACCCCGTCGAAAAACTTCCACACCTGCAAAAA 102621 || || || |||||||||||||| || || || || || || ||||| | | ||| Sbjct 961 ACCACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATTTCCATGTTAGAAGAAA 1020 Query 102622 CTCTTTAACGGATTCGACAAACACGCGC-CGCTTGTCCGCGTCGTGCATGAAATAGAACG 102680 ||| ||||| || | ||||| || | | ||| ||| | || |||| | Sbjct 1021 CTCCTTAACTGACTGCACAAAT-CGTGTTCTCTTAGATTTGTCAACTAAAAAGAAGAAAG 1079 Query 102681 GGTCGGACAGCGTCCAGCCGCCAATGGACGGCAGGATTTTCAAATGCGGGTTTGCCAGCT 102740 | |||| |||||||| || ||||| || || || || ||||| | ||| || | | Sbjct 1080 GATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCTTGTT 1139 Query 102741 TGGCCGCCATCAACTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACGCCCT 102800 | | ||| || |||||||||||||||||||||||||||||||| | || | || | Sbjct 1140 TTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCACGAAGACAATCCTT 1199 Query 102801 TTTGCGGCTTTTGTATGGCGGCCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCGCGGC 102860 |||| || ||||||| || ||||| || |||||||| | ||| || ||||| | |||| Sbjct 1200 TTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGC 1259 Query 102861 CTTTGCACGAGCGCTGCAGCGCTTCAAAACTGCC-GGGAATGGTCTTGAGCGCGTCGTTT 102919 | | || || |||||||| |||| |||||||| || | || ||| ||| ||| Sbjct 1260 CGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAGC-TGTCATTT 1318 Query 102920 AGCCCGTCGCCGCCGCAAATCGGGATGAAGCCGTACAGCAGATG 102963 | || || ||||||||||| || || ||||| || |||| ||| Sbjct 1319 ATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATG 1362 >seq54289 Length=786 Score = 176 bits (194), Expect = 4e-39 Identities = 205/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 29024 CACGCCTCAGTCATCACCCGCTGCACAAAGTCGCGGCCCTTGACGAGCAGCACGTACTCG 29083 |||||||| || |||||| ||| || | || |||||||| || ||| | ||||| || Sbjct 332 CACGCCTCCGTGATCACCTTCTGTACGTACTCTCGGCCCTTTACCAGCTGGACGTAGGCG 273 Query 29084 CAGCGGTCGTACCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTC 29143 || |||||| ||||||| ||||| |||| ||||||| |||||||| ||||| ||||| Sbjct 272 CACCGGTCGAACCAGCGCGCGTGCTGCTCCCACGGCACGTCGTCGTTCTCCCAGTCCTTG 213 Query 29144 AGACCGCCGTCGCAGCAAAAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCG 29203 || ||||| || ||| | |||||| || || ||||||||||| ||||| |||||||| Sbjct 212 AGCCCGCCATCACAGTAGAAGCACTTAGTTTTATCGCCCTGGCCGGTGTAGAAGAATCCC 153 Query 29204 GCCTCGGCCAACTCTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGC 29263 |||||||| | || ||||| || |||| | ||| ||||| || ||| ||||| Sbjct 152 GCCTCGGCGAGTTCCTCGGGTTTTTGCTTCATGCTGCGAGGCCAATCGCTGAAGCTGCGC 93 Query 29264 AAACGCGCGGCTTCCGTGGCATACTGCGGGTGCGCGG 29300 | || || || | | || || ||| |||| ||| Sbjct 92 ATGCGAGCCGCCTTGGAAGCGTAGCGCGCGTGCACGG 56 >seq47026 Length=2159 Score = 116 bits (128), Expect = 3e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 29354 CGCACAAACGGACACTGCGGCGCCCACCGCTTGTGGTCCGTTTCCGGGTCGTCGCCCCTT 29413 |||| || || ||||| |||||||||| | ||||||| | | || ||||||||| Sbjct 2092 CGCAGGAAGGGGCACTGGGGCGCCCACCTTTGGTGGTCCTTGGCGGGATCGTCGCCCGCA 2033 Query 29414 ACCCAATTCGTAATCTCTACCTTGCAAAACGCGCAGCGCACCTCGTCGCCGCGGCCCAAG 29473 ||||| ||| |||| ||||| || |||||||||||||| || || ||||||||||||| | Sbjct 2032 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGG 1973 Query 29474 TAGTAGAACCCG 29485 || ||||| ||| Sbjct 1972 TAATAGAAGCCG 1961 >seq4418 Length=3433 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| ||| | || || | ||||| || || ||||||||||| || ||||| | Sbjct 862 TTCCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTG 803 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || | | || || || ||||| || ||| ||||||| ||||| ||||| || Sbjct 802 ACAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGG 743 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || ||||| || || ||| || || | | | |||||| ||||| Sbjct 742 GAATCCCCTCCTTATCTTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTCAA 683 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | ||||| |||||||| || | ||||| ||||| ||||||||| Sbjct 682 CTTCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCATT 633 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||||||| || ||||| ||||| |||||||| | ||| || | | || Sbjct 389 AGCACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGTCTGACAGTGTGCGTCCATCT 330 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||| || || || || |||| | ||| || ||||| || | |||||||||||| Sbjct 329 TCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTGTCT 270 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || ||| | ||| ||| | ||||| || Sbjct 269 TGAATCTTTGCCTTAACATTTTCGATTGTGTCAGATGCTTCCACTTCTAAAGTAATAGTT 210 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | ||||| ||||| |||||||| Sbjct 209 TTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 178 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||||||| || || |||||||| ||||| || | || || | | || |||| |||| Sbjct 608 TGCAAAGTAGATTCTTTTTGAATATTATAATCAGATAGAGTGCGTCCATCTTCCAACTGT 549 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| || |||| |||||||| ||||| || | ||||||||||| || ||| Sbjct 548 TTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTT 489 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | | | |||||| | ||| ||||| || || |||||||| || Sbjct 488 GCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTCTTGCCAGTC 429 Query 21153 AACGTTTTGACAAATATTTGCATT 21176 | || || ||||| ||||||||| Sbjct 428 AGTGTCTTTACAAAAATTTGCATT 405 >seq185772 Length=366 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 38729 GGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGG 38788 || |||||||||||||||||| |||| | |||| | | ||||||| ||||||||| Sbjct 181 GGTGGCGTGGGGCTGAACCTGTGTGGCGCGAGCCACCTGCTGCTGCTGGACCCGCACTGG 122 Query 38789 AACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAG 38839 |||||||| | ||| |||||| ||||||||| | ||||| |||| ||| Sbjct 121 AACCCGCAGCTGGAGGAGCAGGCCCAAGACCGCGTGTACCGCGTGGGGCAG 71 >seq6747 Length=1699 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| || | ||| || || ||||||||||| ||||| | || || || |||| ||| Sbjct 1341 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTCC 1400 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | || || || || | ||||| | |||||| || || | ||| || ||||| | Sbjct 1401 AATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCTTTGTCTTGG 1460 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 || || ||| || | | | ||||||| ||| ||| ||||| ||||||||||| Sbjct 1461 ATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAATGGTCTTT 1520 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCAT 21175 || |||| ||||| ||||| || ||||| Sbjct 1521 CCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 20972 ATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG 21031 ||| | ||| || ||||||||||||||||| || | || || || | || ||||| || Sbjct 1118 ATGTAGAGTAGATTCCTTTTGAATGTTATAATCAGATAGTGTACGGCCATCTTCCAGTTG 1177 Query 21032 TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||| || ||| |||| || || || ||||| ||| | ||||| ||||| |||||| Sbjct 1178 TTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGAATACCTTCTTTGTCTTGGATCTT 1237 Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 | ||||| | | | ||| || || || || | ||| ||||| || || || Sbjct 1238 TGCCTTCACGTTTTCAATAGTGTCCGATGGTTCTACCTCTAAGGTGATGGTTTTTCCTGT 1297 Query 21152 TAACGTTTTGACAAATATTTGCATT 21176 | || || ||||| || |||||| Sbjct 1298 AAGAGTCTTAACAAAGATCTGCATT 1322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420650867885468