Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6932 129 6e-25 seq296465 104 2e-17 seq6747 96.9 4e-15 >seq6932 Length=2340 Score = 129 bits (142), Expect = 6e-25 Identities = 253/374 (68%), Gaps = 0/374 (0%) Strand=Plus/Plus Query 65660 AACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAGCACGCGCAGGTGCGGGTGCGCC 65719 || ||||||| || ||||| || || || ||||| || | || | ||| | || Sbjct 1076 AAAGGATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCT 1135 Query 65720 TTCTTGATGGCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGCTCCACGCGGTCACG 65779 | || | | ||| | ||||| |||||||| ||||| |||||| |||||| | || Sbjct 1136 TGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCACGAAGACAAT 1195 Query 65780 CCCTTTTGCGGCTTCTGCACGGCCGCCCACGGGTCGTGCACCGCCAGCTTGAAGTCGTCG 65839 || ||||| || || || | || ||||| || ||||| | | | |||||||| || Sbjct 1196 CCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCA 1255 Query 65840 CGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGACTTGAGGCTGTCG 65899 ||||| || || |||||||| || | ||| ||||| |||| || | |||||| Sbjct 1256 CGGCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCA 1315 Query 65900 TTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATGCGTGAGGTTGGGC 65959 || ||||| || |||||||| || || | ||||| || |||| ||| || || || || Sbjct 1316 TTTATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATGAGTAAGATTAGGT 1375 Query 65960 ACGGGCACCTTGTCGGCGGGAAAGTCGCGCCCGTACACGCCCCACTCGACGAAGTAGGCG 66019 | || | || |||| || | | || || ||||| || |||||||||||| Sbjct 1376 ATAGGTATACGATCCACGGGGAATTTTCTAGGATAGACACCCCATTCTACGAAGTAGGCG 1435 Query 66020 GCCACCACCTTGCC 66033 | || || || || Sbjct 1436 CCTACAACTTTTCC 1449 >seq296465 Length=573 Score = 104 bits (114), Expect = 2e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 ||||| || || || ||||| | || || | || ||||||| || |||||| | | Sbjct 348 TTGTTCAATGCAATTGAGACTCTACCATGTATTAAGAAGAAGGCAGACTGGGCGTTACAG 289 Query 117005 TGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||||||| | ||| ||| ||| || || || || | | || || ||||| || || Sbjct 288 TGGATCGGCAGCA-AGACTGCCATATTTGGAGAACGTATTATCGCTTTTGCGGCGGTTGA 230 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| | || || || ||||| || || | ||||||||| | || ||||| || || || Sbjct 229 GGGAATATTTTTCTCAGGCAGCTTTGCTTCAATATTTTGGTTGAAAAAACGAGGGCTGAT 170 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||||| | ||||||||||| || || || || ||||| |||| Sbjct 169 GCCCGGATTAACTTTCAGCAATGAACTTATTTCTAGGGATGAGG 126 >seq6747 Length=1699 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || || || || || || || || ||||| ||||| | || || || |||| | Sbjct 637 ATGCAGATCTTTGTTAAGACACTTACTGGGAAAACTATCACTTTGGAGGTGGA-GCCATC 579 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | ||| | |||| ||| || | || || |||||||| ||| | ||||| Sbjct 578 CGACACTATCGAAAATGTTAAGGCAAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCA 519 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| || || |||||| |||| || | ||||| || |||||||| Sbjct 518 ACAGCGTCTCATCTTTGCTGGTAAACAGTTGGAGGATGGCCGCACTCTGTCGGACTACAA 459 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| || || | || ||||| |||| Sbjct 458 CATCCAAAAAGAATCTACTTTGCATTTAGT 429 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || || |||||||||||| | || || ||| | | Sbjct 1322 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCTTAGAGGTAGAACCATC 1263 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| || ||||| | |||| ||| || | |||||||| || || ||| | |||| Sbjct 1262 GGACACTATTGAAAACG-TGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACC 1204 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| | ||||| | || || ||||| ||||| || | || || || || || | Sbjct 1203 AACAAAGGCTCATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATA 1144 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| || ||||| | || || ||| |||| ||||| Sbjct 1143 ACATTCAAAAGGAATCTACTCTACATTTAGTATTGCG 1107 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || || ||||| || || | || || |||||| | Sbjct 1093 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACGTTAGAAGTTGAAGCCTCT 1034 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||||| | ||||||||||||||||| | || ||| Sbjct 1033 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 974 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || || |||| || | ||||| | || ||||| Sbjct 973 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCAGATTACAAT 914 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| ||| |||| || || Sbjct 913 ATTCAGAAAGAGTCCACCCTTCA 891 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || || || ||||| || | || || ||| || | Sbjct 1549 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTCT 1490 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | || | ||||| | ||||||||||||||||| | || ||| Sbjct 1489 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCGCCTGATCAG 1430 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || || |||| |||| ||||| || |||||||||| Sbjct 1429 CAGCGTCTTATCTTCGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCCGACTACAAC 1370 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || || || | || || || | || ||||| Sbjct 1369 ATTCAAAAAGAATCTACTCTTCACTTGGTATTGCG 1335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513206476874480