Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4418 168 1e-36 seq6747 147 3e-30 seq211979 102 1e-16 >seq4418 Length=3433 Score = 168 bits (186), Expect = 1e-36 Identities = 183/240 (76%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||||| |||||||| ||||| ||| | || |||| | Sbjct 633 AATGCAAATTTTTGTAAAAACACTTACAGGCAAGACTATTACTCTTGAAGTTGAGCCTTC 692 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||||||| ||| |||| || |||||||||||||| || || || || || || | Sbjct 693 TGATACAATTGAAAATGTTAAGGCA-AAAATTCAAGATAAGGAGGGGATTCCCCCAGACC 751 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| |||||||||||||||||||||||| | || ||| | || ||| | ||| || | Sbjct 752 AACAGAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTACA 811 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||| ||||| || ||||| || || |||| | ||||||| || ||| || Sbjct 812 ATATTCAAAAGGAATCTACCTTGCACTTAGTACTACGACTGAGAGGTGGAATGCAAATTT 871 Score = 165 bits (182), Expect = 1e-35 Identities = 182/240 (76%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||||||||| || ||||| ||||| || | || | ||||| Sbjct 405 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTC 464 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||||||| ||| |||| || ||||||||||| || |||||||| || || || | Sbjct 465 TGATACAATAGAAAATGTTAAGGCA-AAAATTCAAGACAAGGAAGGTATTCCTCCAGACC 523 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| || || ||||| || || ||||| || || ||| | || || || ||||||| Sbjct 524 AACAGAGACTGATTTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTATCTGATTATA 583 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||||||||| |||||||| || ||| | ||| || | ||||| || ||| || Sbjct 584 ATATTCAAAAAGAATCTACTTTGCACTTAGTTCTGCGTCTAAGGGGTGGAATGCAAATTT 643 Score = 145 bits (160), Expect = 1e-29 Identities = 177/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||||| || ||||||||||| ||| |||| | |||||| | Sbjct 178 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCATCT 237 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| |||| || || |||||||| || ||||| || || || || || Sbjct 238 GACACAATCGAAAATGTTAAGGCA-AAGATTCAAGACAAGGAAGGCATTCCTCCAGACCA 296 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | ||||| || ||||| ||| | || ||| | || ||| | ||| ||||| Sbjct 297 ACAAAGATTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACACTGTCAGACTATAA 356 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| || ||||| |||||||| ||||| | ||| | | ||||| || ||| || Sbjct 357 TATTCAGAAGGAATCGACTTTGCACTTGGTGCTGCGTCTTAGGGGTGGAATGCAAATTT 415 Score = 123 bits (136), Expect = 4e-23 Identities = 187/264 (71%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || || || ||||||||||| || | || | ||||| Sbjct 861 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 920 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | || |||||||| || |||||||| || || || || || Sbjct 921 TGATACAATAGAAAATGTCAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCA 980 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || | |||||||| || || ||| | || ||| | |||||||| ||||| || Sbjct 981 ACAGAGATTGATTTTTGCCGGTAAGCAACTTGAAGATGGAAGAACATTATCTGATTACAA 1040 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTC 124777 |||||| |||||||| || | || | ||| | | | |||||||| | ||| | | Sbjct 1041 TATTCAGAAAGAATCTACCCTTCACCTTGTTCTCAGACTCAGAGGTGGTGTGTAAACTGC 1100 Query 124778 ATAAAAATTGATTGTAAATAAATA 124801 | ||||||||| | |||||||| Sbjct 1101 TT--AAATTGATT-TTAATAAATA 1121 >seq6747 Length=1699 Score = 147 bits (162), Expect = 3e-30 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || ||||| ||||| || || ||||| | ||| || Sbjct 1322 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCTTAGAGGTAGAACCATC 1263 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || || || ||||| ||||||||||| || || || || Sbjct 1262 GGACACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCA 1203 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||| |||||||| ||||||||| | || ||| | || ||| || |||||||| Sbjct 1202 ACAAAGGCTCATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATAA 1143 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| ||||| ||| | ||||| || || ||| | || || ||||| ||| || Sbjct 1142 CATTCAAAAGGAATCTACTCTACATTTAGTATTGCGTCTTCGTGGCGGTATGCAAATTT 1084 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||||| || || ||||| || || |||| ||||||| | Sbjct 1093 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACGTTAGAAGTTGAAGCCTCT 1034 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| |||| ||||| ||||| ||||| || || ||||||||||| Sbjct 1033 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 974 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || || ||||| || ||| |||| || || |||||| ||| Sbjct 973 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCAGATTACAAT 914 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || || | || ||||| | ||| | ||||| ||||| Sbjct 913 ATTCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGGTAT 864 Score = 129 bits (142), Expect = 9e-25 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| |||||||| || || || ||||||||| | |||||||| || || || Sbjct 1693 AAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAACAACGTCTTATTTTCGCGGGCAAG 1634 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||||| ||| |||| ||| | || || || || ||||||||||| ||||||||| Sbjct 1633 CAATTAGAAGATGGTCGTACACTTTCTGACTACAACATCCAAAAAGAATCTACTTTGCAT 1574 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 || || | |||||| |||||||||| Sbjct 1573 TTAGTACTTCGTTTAAGAGGTGGTAT 1548 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || ||||| || || || || ||| | || | ||| | | Sbjct 1549 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTCT 1490 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| ||||| ||||| ||||| ||||| || || || |||||||| Sbjct 1489 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCGCCTGATCAG 1430 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| || || ||||| ||||| || || | || || | || || || Sbjct 1429 CAGCGTCTTATCTTCGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCCGACTACAAC 1370 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| ||| | || ||||| || ||| | || ||||| || Sbjct 1369 ATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCGTGGTGGAAT 1320 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||||| || || |||||||| ||| | ||| | || || Sbjct 637 ATGCAGATCTTTGTTAAGACACTTACTGGGAAAACTATCACTTTGGAGGTGGAGCCATCC 578 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| |||| || || || |||||||| || || || || || || || Sbjct 577 GACACTATCGAAAATGTTAAGGCA-AAGATCCAAGATAAGGAGGGCATTCCCCCAGACCA 519 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || ||||| || ||||| || |||||| | || || | || || || Sbjct 518 ACAGCGTCTCATCTTTGCTGGTAAACAGTTGGAGGATGGCCGCACTCTGTCGGACTACAA 459 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||||||||||| || | ||| | || ||||| || Sbjct 458 CATCCAAAAAGAATCTACTTTGCATTTAGTACTTCGTCTTCGCGGTGGAAT 408 >seq211979 Length=1174 Score = 102 bits (112), Expect = 1e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 203520 TATAAGTATGTTTAATAATAGGTATAAATTCAGTTAAATATTCTGATAATTTATAATTTA 203579 |||||| ||||||||||| || |||||| || | |||||| ||| ||| |||| | Sbjct 919 TATAAGGATGTTTAATAACTGGAGGAAATTCTGTGAGATATTCATCTAACTTAGAATTGA 978 Query 203580 TTTTATTTCTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGCAATCCAACATGGTA 203639 ||||||||||||| ||| | || |||||||| ||||| | ||| | ||||||||| | Sbjct 979 TTTTATTTCTAATTGTTCTCGCTGAATATTCCTGTTTATCAGAAGCCACCCAACATGGCA 1038 Query 203640 CAATATTATGTGAATCAACTTGATAAACATCAATATTTATTTTA 203683 | | ||| || | ||| || || || || || || |||| || Sbjct 1039 CCACATTGTGAGCATCTACCTGGAAAGTATTAAAATATATTATA 1082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752504782806400