Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6932 163 2e-35 seq6747 127 2e-24 seq4418 105 6e-18 seq47026 82.4 7e-11 >seq6932 Length=2340 Score = 163 bits (180), Expect = 2e-35 Identities = 338/497 (68%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 21581 GCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGACAAGGTGCCGGCG 21640 |||||||| || |||||||| || || | ||| | |||||||| || | || Sbjct 1434 GCCTACTTCGTAGAATGGGGTGTCTATCCTAGAAAATTCCCCGTGGATCGTATACCTATA 1375 Query 21641 CCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGCGACGGCATCAAC 21700 || ||||| | ||| | || || ||||| | || || ||||| || || ||||| || Sbjct 1374 CCTAATCTTACTCATTTGCTCTATGGCTTTATTCCAATTTGCGGCGGTGATGGCATAAAT 1315 Query 21701 GACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCGTGTGCGGGTCGG 21760 ||| ||||| | | |||||||| | ||| |||| || || ||| || || Sbjct 1314 GACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAGCGGTCCTGTAGCGGCCGT 1255 Query 21761 GCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAGCCCCAAAAGGGC 21820 | || ||||| || | || |||||||| ||||| ||| ||||||| || ||||| || Sbjct 1254 GAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGA 1195 Query 21821 GTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATGGCAATGAAGAGG 21880 | || || |||||||| || ||||||||||||||||| ||| | ||| || | || Sbjct 1194 TTGTCTTCGTGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAA 1135 Query 21881 GCCAATCCTCACATTAAAG--TGTTCGCATCGATCGGCGGATGGACTCTGTCCGATCCAT 21938 ||| ||| | ||| ||| | ||| | || || || || ||||| || ||||||| | Sbjct 1134 GCCCGCCCTGA-ATTGAAGATTCTTC-CCTCTATTGGTGGGTGGACGCTCGCCGATCCTT 1077 Query 21939 T----TTATCATATGCACGACGCCGACGTCAGACGGGTGTTTATCGATTCAGTTGAAGAA 21994 | || | | || || | | | | ||| ||| | | |||||| | || Sbjct 1076 TCTTCTTTTTAGTTG-ACAAATCTAAGAGAACACG---ATTTGTGCAGTCAGTTAAGGAG 1021 Query 21995 TTTCTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAGTTTCCCGGCGGC 22054 ||||| || || ||||| |||| ||| || || | |||||||||||||| || || || Sbjct 1020 TTTCTTCTAACATGGAAATTCTTTGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGT 961 Query 22055 AAGGGAGCCAACCCCGA 22071 || || || ||||| || Sbjct 960 AAAGGTGCTAACCCTGA 944 >seq6747 Length=1699 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | ||||| ||||||||||||||||| ||| | |||||| || Sbjct 1337 CAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTC 1396 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | || ||||||||| |||| |||||||||||||| || || |||||||| ||||| Sbjct 1397 TTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCTTTGTC 1456 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| ||| || | ||| | || || | | || || || | || | || Sbjct 1457 TTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAATGGT 1516 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| |||||||||||||| Sbjct 1517 CTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| |||||||| |||||||| || || |||||| |||||| | |||||| ||| Sbjct 441 GTAGATTCTTTTTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAACTGTTTACCA 500 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||||||||| || || || || ||||||||||| ||| || ||| ||| Sbjct 501 GCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTTGCCTTA 560 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| ||||| | ||| ||||| | || | ||||| || || || || Sbjct 561 ACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATAGTTTTCCCAGTAAGTGTC 620 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 621 TTAACAAAGATCTGCAT 637 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || |||||||| ||||| |||||||| || |||||| ||| || Sbjct 885 ACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGACAAAGTGCGACCATCTTCC 944 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || || ||||| |||| |||||||||||||| || || |||||||| |||||| Sbjct 945 AATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGG 1004 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | ||| | ||||| | | || || || | || | ||||| Sbjct 1005 ATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAACGTAATTGTTTTT 1064 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| |||||||| ||||| Sbjct 1065 CCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | || | || |||||||| | || |||||||| ||||| ||||| || Sbjct 637 TACCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAG 696 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || |||||| ||||| || ||||| | || ||||| || ||||| || | Sbjct 697 AGAGAGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGGG 756 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || |||||||||||| || || |||||| | ||| | ||||| | || | || Sbjct 757 GAATACCCTCCTTGTCTTGTATCTTGGCTTTAACATTTTCAATAGTGTCTGATGGT-TCC 815 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || || || |||||||| |||||||| Sbjct 816 ACTTCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| || || || | ||||| || ||||||||||| |||| | Sbjct 1093 TACCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAAT--C 1150 Query 118570 TCATAGTG--CGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 |||||| || ||| || || ||||||||||| | ||||| | || || || || Sbjct 1151 AGATAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGG 1210 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCT 118686 || || || || |||||| || ||| || || | ||| | ||||||| || | | Sbjct 1211 GGGAATACCTTCTTTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGT-T 1269 Query 118687 CGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| | ||| | ||||| || || ||||| || ||||| |||||||| Sbjct 1270 CTACCTCTAAGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1321 >seq4418 Length=3433 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | ||||| ||||||||||| || ||||| | |||||| ||| || Sbjct 614 ACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGATAGAGTGCGTCCATCTTCC 555 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||| || ||| | || || | ||| || || ||||| || || ||||||||| | Sbjct 554 AACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 495 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||||| | ||| | || || | ||| || || || | || | || || Sbjct 494 ATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCT-TCCACTTCCAATGTGATAGTCTT 436 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || ||||||||||| ||||| Sbjct 435 GCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587 || ||||| | ||||| || |||||||| ||||| || | | |||| |||| ||| | Sbjct 842 ACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTC--TGACAGTGTGCGTCCATCTT 785 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | || |||||||| || | || || | ||| || || || || || |||||||| ||| Sbjct 784 CAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCTT 725 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||||||| ||||| | ||| | || || | ||| || || | || | || | Sbjct 724 GAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTCAACTTCAAGAGTAATAGTCT 665 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || |||||||||||||| ||||| Sbjct 664 TGCCTGTAAGTGTTTTTACAAAAATTTGCAT 634 >seq47026 Length=2159 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 105990 GGCTTCTATTACATCGGTCGCGGAGATGAGGTACGTTGTGCCTTTTGCAAGGTCGAGATT 106049 |||||||||||| | || ||||| ||||| ||||| || || ||||| || || || ||| Sbjct 1962 GGCTTCTATTACCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATT 2021 Query 106050 ATGAATTGGAGAGAGGGCGACGATCCGATTGTCGATCACAATAGATGGGCGCCGCAATGC 106109 ||||| ||| | |||||||||||| || ||| | || |||||||| || ||| Sbjct 2022 ATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAAAGGTGGGCGCCCCAGTGC 2081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432177994641916