Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6932 194 2e-44 seq6747 122 1e-22 seq4418 102 9e-17 seq89899 95.1 1e-14 seq24461 87.8 2e-12 >seq6932 Length=2340 Score = 194 bits (214), Expect = 2e-44 Identities = 632/977 (65%), Gaps = 31/977 (3%) Strand=Plus/Minus Query 96463 GGGGCTTATTTTGTAGAATGGGGCGTGTACGATCGTAAGTTTCCCGCGGACAAGGTGCCC 96522 || || || || ||||||||||| || || | | || || |||| ||| | || Sbjct 1437 GGCGCCTACTTCGTAGAATGGGGTGTCTATCCTAGAAAATTCCCCGTGGATCGTATACCT 1378 Query 96523 ATTCCCAATCTGACGCATCTATTGTACGGTTTTATACCCATTTGCGGAGGCGACGGTATC 96582 || || ||||| || ||| | | || || ||||| || |||||||| || || || || Sbjct 1377 ATACCTAATCTTACTCATTTGCTCTATGGCTTTATTCCAATTTGCGGCGGTGATGGCATA 1318 Query 96583 AACGACAGTCTAAAACAGGTACCCGGCTCTTTTGAGGCTTTACAAAAATCATGTGCCGGC 96642 || ||||| ||||| || | ||| ||| | || | || || ||| |||| Sbjct 1317 AATGACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAGCGGTCCTGTAGCGGC 1258 Query 96643 AGAGACGATTTCAAGGTTAGCATCCACGACATTTACGGTGCTCTACAAAAACCGCAAAAA 96702 | || || ||||| || |||||||| | | || |||||||||| |||||| Sbjct 1257 CGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAA 1198 Query 96703 GG--TGTTTCCGAATACAATGAACCTTACCGTGGCAATTTTGGCCAGCTCATGGCTATTC 96760 || ||| | || | || || || ||| ||||| |||||||| | ||| || Sbjct 1197 GGATTGTCTTCG--TGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATG-----TC 1145 Query 96761 GCAAACATAA-----CCCTCATTTAAAAATTTTGCCTAGCATCGGTGGTTGGACACTGAG 96815 | || | || |||| | || || ||| | || || ||||| ||||| || Sbjct 1144 ACTAAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTCGC 1085 Query 96816 CGACCCTTTCTATTTTTTCGCCGACGACTATAAACGAAAAGTATTTGTGGACTCGGTTCG 96875 ||| ||||||| ||||| | ||| | | ||| ||| | ||||||| | || ||| Sbjct 1084 CGATCCTTTCTTCTTTTTAGTTGACAAATCTAAGAGAACACGATTTGTGCAGTCAGTTAA 1025 Query 96876 TGAATTCTTGCAAGTGTGGAAGTTTTTCGATGGAGTAGACATCGACTGGGAGTTTCCCGG 96935 || || | | | ||||| || || ||||| || || ||||| |||||||| || || Sbjct 1024 GGAGTTTCTTCTAACATGGAAATTCTTTGATGGTGTTGATATCGATTGGGAGTTCCCTGG 965 Query 96936 CGGAAAGGGTGCCAACCCCGACGTAGGCGATCCTAGCGTGGATGGAAACACATATGTAAC 96995 || || ||||| ||||| || | || | || || ||||| | ||||||| Sbjct 964 TGGTAAAGGTGCTAACCCTGATCTCGGT-AGCCCAGAA--GATGGTGATTGTTATGTAAG 908 Query 96996 ACTATTGAAAGAACTACGCCTAATGCTAGACAAACTGGGTG-------TGGTGAACAAAC 97048 | |||||||| |||| ||||| || | || | |||| || ||| Sbjct 907 TTTGATGAAAGAATTACGTGAGATGCTCGATGAGCTCTCAGCTAAGAATGGT-AAGAAA- 850 Query 97049 GCGTGTACGAGTTGACCAGCGCCGTGGGAGCAGGCTACGATAAAATAGACGTGATAGATT 97108 ||||| || || || | | | || | |||||||| | || | || | Sbjct 849 -----TACGAATTAACTTCTGCTATTAGCTCTGGATGGGATAAAATCCAAGTTGTTGACT 795 Query 97109 ACTCTTCGGCTAGTCAATATTTGGATCATGTGTTTTTAATGAGTTACGACTTCAAAGGCG 97168 || |||| | ||| |||||||| | || || |||||||| |||||||| || | Sbjct 794 ACGGCAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTATGACTTCAAGGGAG 735 Query 97169 CATGGTCCAACACGGATTTGGGTCATCAAACACCATTGTACGCACCTTCGTGGAACCCTG 97228 | ||||| || | | || |||||||||||||||||||| ||| | |||| || Sbjct 734 CCTGGTCAAATGATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGAGTCCCA 675 Query 97229 ACGACAAGTACACAACTGACTATGCCGTAAAAGAACTGCTCAAGCAAAAAGTACCTTCCA 97288 | || | |||||| |||||| | |||||| | || | || ||| | | | Sbjct 674 AGGAAACTTACACATCTGACTTCGGAGTAAAATACTTGTTGGCACAGGGAGTGAATCCTA 615 Query 97289 ACAAAATTGTAGTTGGAGTCGCCATGTACGGCAGAGGGTGGAGTGGTGTGCACGATTACA 97348 | || |||||||| || || |||||||| || | || |||| ||| || || |||||| Sbjct 614 AGAAGATTGTAGTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGCGTTCATGATTACG 555 Query 97349 AGAACAATAACGTATTTACGGGCGTCGCCACAGGTCCGGTAAAAGGTACATGGGAAAACG 97408 | |||| | || || ||| ||| || || || || |||||||| ||| || ||| Sbjct 554 AAGACAACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGTACTTGGCAAGACG 495 Query 97409 GTGTCGTCGATTATAGG 97425 | || || ||||| ||| Sbjct 494 GAGTGGTTGATTACAGG 478 >seq6747 Length=1699 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||||| ||| || ||||| ||||| ||| ||| || ||||||||||| |||| Sbjct 639 CCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 698 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||||||||| || || || || || || || | || Sbjct 699 AGAGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGGGGA 758 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||||||| || || ||| | | | | ||||| | |||||| Sbjct 759 ATACCCTCCTTGTCTTGTATCTTGGCTTTAACATTTTCAATAGTGTCTGATGGTTCCACT 818 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| || || || |||||||||||||| ||||| Sbjct 819 TCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | ||| | ||||| || | ||| ||| || |||||||||||||| | | Sbjct 867 CCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGAC 926 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || | ||||||||||| || || || |||||||| || | || Sbjct 927 AAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 986 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||| ||||| |||||| || | | | | ||||| | ||| || Sbjct 987 ATGCCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACT 1046 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||| || ||||| || || || || || ||||| |||||||| Sbjct 1047 TCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 >seq4418 Length=3433 Score = 102 bits (112), Expect = 9e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || |||| ||||| || || ||||| || || ||||||||||| ||||||| Sbjct 633 TCCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGA 574 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || | || || | ||| || || ||||| || |||| ||| ||||| | || Sbjct 573 TAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGG 514 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||||||| | ||| |||||| || | | | | || || | ||||| Sbjct 513 AATACCTTCCTTGT-CTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 455 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | ||||| || ||||| || || ||||||||||| ||||||||| Sbjct 454 CTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 405 >seq89899 Length=492 Score = 95.1 bits (104), Expect = 1e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 1 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTA 60 Query 60131 CCGAGGATTG 60140 |||| || || Sbjct 61 CCGAAGACTG 70 >seq24461 Length=2068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| |||||| |||||| |||||||||||||||||||| | |||| ||| ||| Sbjct 1040 CTCCCCGGCGGGGAATTGAACCCCAGTCTCCCGCGTGACAGGCGGGCGTACTAACCGCTA 981 Query 60126 TACTACCGAGGAT 60138 || |||||||||| Sbjct 980 TAGTACCGAGGAT 968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569583773102440