Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq6747 107 3e-18 seq4418 102 1e-16 >seq6747 Length=1699 Score = 107 bits (118), Expect = 3e-18 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 ||||| ||||||| ||||||||| ||| || || |||||||| || || || | || ||| Sbjct 1110 AATACTAAATGTAGAGTAGATTCCTTTTGA-ATGTTATAATCAGATAGTGTACGGCCATC 1168 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || | |||||||||||||||||| | ||||| || || || ||||| |||||||| || Sbjct 1169 TTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGAATACCTTCTTTGTC 1228 Query 146185 TTG 146187 ||| Sbjct 1229 TTG 1231 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| ||||| |||||||||||||| || || || || ||| Sbjct 1551 CCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAA 1610 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| |||||||| || || || ||||| | | ||| ||||| |||||| Sbjct 1611 AGTGTACGACCATCTTCTAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGA 1670 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 1671 ATGCCTTCTTTGTCTTG 1687 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | |||||||| || | |||||||||||| || || || || | Sbjct 1321 TTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGG 1380 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | || || || ||||| |||||||| || || | | |||||||| || | Sbjct 1381 AAAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCG 1440 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || || ||||| ||||| Sbjct 1441 GGATGCCCTCTTTGTCTTG 1459 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | ||| ||||| |||||||||||||| || || || || | Sbjct 409 TTCCACCGCGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCG 468 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| | || ||| || || ||||| |||||||| || | | || || || || | Sbjct 469 ACAGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGG 528 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || || |||||||| Sbjct 529 GAATGCCCTCCTTATCTTG 547 >seq4418 Length=3433 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| ||||| | | ||||| || ||||| ||||| || |||||||| |||| Sbjct 406 TTCCACCCCTAAGACGCAGCACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGTCTG 347 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | ||| ||||| || |||||||||||||| || || |||| Sbjct 346 ACAGTGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGGAG 287 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| || ||||| Sbjct 286 GAATGCCTTCCTTGTCTTG 268 Score = 100 bits (110), Expect = 4e-16 Identities = 154/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| | || | || | ||||||||||| ||||| ||||| || Sbjct 1088 CCACCTCTGAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGAATATTGTAATCAGAT 1029 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| || | ||| || || |||||||||||||| || || || || ||| Sbjct 1028 AATGTTCTTCCATCTTCAAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGGA 969 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| || || ||||| ||| ||||||| Sbjct 968 ATGCCTTCTTTGTCCTGAATTTTTGCCTTGACATTTTCTATTGTATCAGAAGCTTCTACT 909 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || | |||||| ||||| || || | ||||| | ||| ||||||||| Sbjct 908 TCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCATT 861 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| || || | | || || || |||||||||||||| ||||||||||| | Sbjct 634 TTCCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAG 575 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| | | ||| || || ||||| || || ||||||| ||| || || || |||| Sbjct 574 ATAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAG 515 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| || ||||| Sbjct 514 GAATACCTTCCTTGTCTTG 496 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | |||||| || ||||| ||||| || ||||| || || || Sbjct 176 CCACCTCTCAGACGCAGTACCAAGTGCAAAGTCGATTCCTTCTGAATATTGTAGTCAGAT 117 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | || |||||||||||||| | ||||||||||| || ||| Sbjct 116 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATTAGCCTTTGCTGATCTGGGGGA 57 Query 146171 ATTCCTTCTTTATCTTG 146187 || || |||||||| || Sbjct 56 ATGCCCTCTTTATCCTG 40 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740621786236160