Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq6747 114 8e-21 >seq6747 Length=1699 Score = 114 bits (126), Expect = 8e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 || ||| ||||| || | || || | || |||||| |||||| || ||||||||||| Sbjct 407 GATTCCACCGCGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTC 466 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 ||||| ||| | || |||||||| || || || || ||||| ||||| ||||| Sbjct 467 CGACAGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGG 526 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 ||| | || |||||| || |||||| ||| | || | || | |||| | || Sbjct 527 GGGAATGCCCTCCTTATCTTGGATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTC 586 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| ||||| ||||| || || || || || |||||||||||||| Sbjct 587 CACCTCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 637 Score = 113 bits (124), Expect = 3e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| ||| | |||| |||||| || |||||||||||||| Sbjct 1322 TCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGA 1381 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 || ||| |||| ||||| ||||| || ||||| || || |||||||| || | ||| Sbjct 1382 AAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGG 1441 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCG 34339 | | || ||| ||||| || ||| || |||| || | || | ||| | | ||| Sbjct 1442 G-ATGCCCTCTTTGTCTTGGAT-TTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCC 1499 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| || ||||| || || || || ||||| ||||| |||||||| Sbjct 1500 ACTTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 |||| ||| ||||| |||||||| || |||||||| || || ||| | || ||| Sbjct 657 ACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGACCATCCTCC 716 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300 | |||||| || || ||||| || || || || || ||| | | ||||||||| | Sbjct 717 AGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTGTCTTGT 776 Query 34301 ATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359 ||||| |||||| || | || | || | | ||| || || | ||||| ||||| Sbjct 777 ATCTTG-GCTTTAACATTTTCAATAGTGTCTGATGGTTCCACTTCTAATGTGATAGTTTT 835 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| || || |||||||||||||| Sbjct 836 CCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321841459438880