Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq54289 174 1e-38 seq4418 113 4e-20 seq6932 96.9 3e-15 >seq54289 Length=786 Score = 174 bits (192), Expect = 1e-38 Identities = 174/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 13218 TGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACACT 13277 ||||| || | |||||||| | ||||||| | | || || || || ||||||||||| Sbjct 109 TGGCCTCGCAGCATGAAGCAAAAACCCGAGGAACTCGCCGAGGCGGGATTCTTCTACACC 168 Query 13278 GGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGCCG 13337 ||| | || || || || ||||||||||| ||||| ||||| | || || |||||| Sbjct 169 GGCCAGGGCGATAAAACTAAGTGCTTCTACTGTGATGGCGGGCTCAAGGACTGGGAGAAC 228 Query 13338 GAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGCTA 13397 || || || || ||||| ||||| | | ||||||||||| ||||||||||| ||||| Sbjct 229 GACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTACGTCCAGCTG 288 Query 13398 GTCAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGCCTGCG 13443 || ||||| |||| ||||||||||| || |||||||| || |||| Sbjct 289 GTAAAGGGCCGAGAGTACGTACAGAAGGTGATCACGGAGGCGTGCG 334 >seq4418 Length=3433 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| || || ||| ||||||| || ||||| ||||| |||||||| | Sbjct 860 CCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTGAC 801 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || ||||||||||| || || || | || ||||||||| || || Sbjct 800 AGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGA 741 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||| || ||||||| |||||| | | | || | ||| || Sbjct 740 ATCCCCTCCTTATCTTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTCAACT 681 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| |||||||| || || || || ||||| |||||||| Sbjct 680 TCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCAT 634 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||||||||| || ||||| |||| ||| | || ||| Sbjct 386 ACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGTCTGACAGTGTGCGTCCATCTTCC 327 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||||||||| ||||| | |||||||| ||||| | || |||||||| | Sbjct 326 AGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTGTCTTGA 267 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| |||||| | | |||| | ||||| || | ||||| || ||| Sbjct 266 ATCTTTGCCTTAACATTTTCGATTGTGTCAGATGCTTCCACTTCTAAAGTAATAGTTTTG 207 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || ||||| |||||||| Sbjct 206 CCAGTCAGTGTTTTAACAAAAATTTGCAT 178 >seq6932 Length=2340 Score = 96.9 bits (106), Expect = 3e-15 Identities = 283/431 (66%), Gaps = 10/431 (2%) Strand=Plus/Plus Query 6850 GTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTCCA 6909 ||| || || || || || || |||||||| || ||||| || || || || || ||||| Sbjct 949 GTTAGCACCTTTACCACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATTTCCA 1008 Query 6910 CGTCTCCAGAAACTCGCGCACGCTCTGCACAAACACCCGACGCTTGGCGGAGTCGTGCAT 6969 || |||||||| || ||||||||| | ||| | | | || || Sbjct 1009 TGTTAGAAGAAACTCCTTAACTGACTGCACAAATCGTGTTCTCTTAG---ATTTGT-CAA 1064 Query 6970 CTT----GTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGAT 7025 || | |||| || ||| ||||||||||| || || ||||| || || ||| | Sbjct 1065 CTAAAAAGAAGAAAGGATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATT 1124 Query 7026 TGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGT 7085 ||| | ||||| | | ||| | |||||||| || || || || ||||||| Sbjct 1125 CAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCC 1184 Query 7086 ACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTT 7145 ||| || || ||||||||||| |||| || |||| |||||| || |||| Sbjct 1185 ACGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTT 1244 Query 7146 TGAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTT-CAAACGACCCCGGCACCTGT 7204 |||| || || ||||| || || | |||| |||| |||| || | | || | Sbjct 1245 TGAAGTCCTCACGGCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCG-ATCTCT 1303 Query 7205 TTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGG 7264 || ||| ||| || | || || || |||||||| || | ||| || || |||||||| Sbjct 1304 TTTAAGCTGTCATTTATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATGA 1363 Query 7265 CTGAGATTGGG 7275 | ||||| || Sbjct 1364 GTAAGATTAGG 1374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393570408317983