Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq6932 176 3e-39 seq4418 116 3e-21 seq54289 104 2e-17 seq6747 98.7 8e-16 >seq6932 Length=2340 Score = 176 bits (194), Expect = 3e-39 Identities = 728/1125 (65%), Gaps = 45/1125 (4%) Strand=Plus/Plus Query 90774 GTTCATTGTGTTGAGCAGATCACCATTATCGGCGTCAATTTCCCATGCAAACAATCCACC 90833 |||||| | || || |||||||| ||||| ||||| |||||||| ||||| | ||||| Sbjct 259 GTTCATGGCATTCAGTAGATCACCGTTATCAGCGTCGATTTCCCAAGCAAAGAGACCACC 318 Query 90834 CAACTTGTT-TTGATCAACGTATCTGCTTTTAGCCAAAACGGAATCAACGCTGTCAAACG 90892 | ||||| || ||| | ||| | | || | | ||| || | | ||||| | | Sbjct 319 TAGTTTGTTATTTCTCA-CATATTTACCCTTTTCAATAACTGATCTAGCATTGTCATAGG 377 Query 90893 TGATAAGGTCGGCTTTATTTTTGT-TAAAAACATATGATGCTTCGGCAACTTTGTCAAAC 90951 | | |||||| | | | | || | || ||||| | |||| ||| || ||||| | Sbjct 378 TTACAAGGTCTCCAGT-TGATGGTCTGAAGACATAAGGAGCTTGGGCGACATTGTCGTAA 436 Query 90952 TTGTACACGTACTCG--TTTAT-ATTTTCTTTT---ATTTGGCGATAGTCAACGACTCCA 91005 | | | ||| | || | | ||| || || | | || ||||| ||||| Sbjct 437 TGAAATTCCCACTTGCCTTGAGCAACTTCATTCGCAATCTCCCTGTAATCAACCACTCCG 496 Query 91006 TCTTCCCACGTGCCCGTAACCGGACCGTTAGCGACACCA-TCAA---AATAGTTATCACC 91061 |||| ||| || || | || || || ||||| || | || ||| ||| || Sbjct 497 TCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAAT-GTTGTC--- 552 Query 91062 TTTGTAATCAGACACGCCTGTCCAGCCGCGCCCGTACATGGCGACACCAATAATTATTTT 91121 || ||||||| ||||| ||||| || || || |||||||| ||||| | | || || Sbjct 553 TTCGTAATCATGAACGCCAGTCCAACCACGACCATACATGGCAACACCTACTACAATCTT 612 Query 91122 ACTAGAATCAACACCTTGTTTTGTGAGCA-----TTTGCACGGCATGATGCGTGGTGTAC 91176 ||| || || || ||| | | || ||| | | | | | | ||||| Sbjct 613 CTTAGGATTCACTCCCTGT---GCCAACAAGTATTTTACTCCGAAG--TCAGATGTGTAA 667 Query 91177 AACTCGTTCGGGTTCCATTGCGGGGCGTATAGTGTCGTTTGATAGCCCAA----ATCGGT 91232 || || || ||||| || ||||| | || ||||||| | |||| ||| Sbjct 668 GTTTCCTTGGGACTCCATGCAGGCGCGTACAATGGTGTTTGAT-GTCCAAGAGTATC--- 723 Query 91233 ATTTGACCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAACTTTTG 91292 ||||||||| ||||| || || || ||| |||| | | || | | || | | ||||| Sbjct 724 ATTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTTTG 783 Query 91293 TGCAGCGTCATAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCGCTTGTCAA 91352 || | | || || |||| || ||| || || | || | | || || || || Sbjct 784 AGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTTAA 843 Query 91353 TTCGTACACTTTACCTGTTTGTGCTTGCAAATCATCCAACATGTCACGCAACTCTTTTAG 91412 |||||| ||||| | | ||| | ||||| | ||| ||||| || ||||| | Sbjct 844 TTCGTATTTCTTACCATTCTTAGCTGAGAGCTCATCGAGCATCTCACGTAATTCTTTCAT 903 Query 91413 CAAAACAATGTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGATTAGCGCCTTT 91472 |||| | || | || | || | | || | || | | || ||||| ||||| Sbjct 904 CAAACTTACATAACAATCACCATCT--TCTGGGCTA-CCGAGATCAGGGTTAGCACCTTT 960 Query 91473 ACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACTTGCAAAAA 91532 ||| || || || |||||||| ||||| ||||| ||||| |||||||| | | | ||| Sbjct 961 ACCACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATTTCCATGTTAGAAGAAA 1020 Query 91533 TTCTTTAACCGAATCAACGAA-CACGTT-TCTTCG-TTTGACATCGTGCATAAAATAGAA 91589 || ||||| || | || || | ||| |||| | |||| || | | ||| |||| Sbjct 1021 CTCCTTAACTGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACT---AAAAAGAAGAA 1077 Query 91590 CGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGGGTTGGCCAA 91649 || || | | ||||| ||||| || || || | || || || | ||| ||| Sbjct 1078 AGGATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCTTG 1137 Query 91650 CTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGGATACACC 91709 || | ||||| || ||||||||||| ||||| ||||||||||| | || | || Sbjct 1138 TTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCACGAAGACAATCC 1197 Query 91710 TTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTAAAATCATCGCG 91769 ||||||||||||||||| |||||||| |||||||| || || ||||| || || || || Sbjct 1198 TTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACG 1257 Query 91770 TCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTGAGGGCATCGTT 91829 || | || || || |||| || ||||| || || ||| | | || || Sbjct 1258 GCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATT 1317 Query 91830 TAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATG 91874 || ||||| || |||||||| || ||||| || || | || ||| Sbjct 1318 TATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATG 1362 >seq4418 Length=3433 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| ||||| | ||| | || ||||| |||||||| |||||||| | || ||| Sbjct 851 AGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTGACAGTGTGCGT 792 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | |||||| || ||| | ||||| || ||||| || ||| | || ||| Sbjct 791 CCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCC 732 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| ||||| | ||| || | | ||| || ||| ||||| ||||| || Sbjct 731 TTATCTTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTCAACTTCAAGAGTA 672 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||| || | |||||||||||||||||||||| Sbjct 671 ATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCATT 633 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || || | |||||| || |||||||| ||||| ||||| || | | |||| | Sbjct 1079 AGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGAATATTGTAATCAGATAATGTTCTT 1020 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | ||| || || ||| | || | ||| ||||| || ||| | |||||| Sbjct 1019 CCATCTTCAAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGGAATGCCTTCT 960 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || ||||| | |||||| | | | | || ||| | || ||| | ||| Sbjct 959 TTGTCCTGAATTTTTGCCTTGACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTG 900 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || ||||||| |||| ||||| || |||||||||||| Sbjct 899 ATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCATT 861 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| ||| | || || | ||| | || |||||||||||||| || || || | Sbjct 633 TCCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGA 574 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||||||||| |||||||| || | || ||||| ||||| || || Sbjct 573 TAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGG 514 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||||| | ||| || | | | | || ||| | || Sbjct 513 AATACCTTCCTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCAC 454 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| | ||||| |||| ||| |||||||||||||||||| Sbjct 453 TTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 405 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || | || |||| ||| | || ||||| || ||||| || ||||| | Sbjct 405 TCCACCCCTAAGACGCAGCACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGTCTGA 346 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | |||||||| ||| || || || | || | ||||||||| || || Sbjct 345 CAGTGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGGAGG 286 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || ||| | | ||| || | | | | |||||| | || Sbjct 285 AATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGATGCTTCCAC 226 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || ||||||| |||| |||||| |||||||||||||| Sbjct 225 TTCTAAAGTAATAGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 178 >seq54289 Length=786 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 20153 AACCAACGTGCGTGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTTTAAGGCCGCCA 20212 ||||| || ||||| || ||||| || | ||| || || ||||| || || || |||||| Sbjct 263 AACCAGCGCGCGTGCTGCTCCCACGGCACGTCGTCGTTCTCCCAGTCCTTGAGCCCGCCA 204 Query 20213 TTGCAATAAAAACACAAAGTTTTATCACCGCGCGACGTATAATAAAATCCCGCTTCGGCC 20272 | || || || ||| ||||||||| || | || || | |||||||| ||||| Sbjct 203 TCACAGTAGAAGCACTTAGTTTTATCGCCCTGGCCGGTGTAGAAGAATCCCGCCTCGGCG 144 Query 20273 AATTCATCGGGCCTTTGCTTCATGCTGCGCGGCCA 20307 | ||| ||||| |||||||||||||||| ||||| Sbjct 143 AGTTCCTCGGGTTTTTGCTTCATGCTGCGAGGCCA 109 >seq6747 Length=1699 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||||||| |||||| || || ||||| ||||| ||||| || | | Sbjct 867 CCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGAC 926 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||||||||| || || ||| ||||||| | || ||||| || Sbjct 927 AAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 986 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| || || || |||| ||| || | | ||| |||||| || || | Sbjct 987 ATGCCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACT 1046 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || |||| || || | |||||| |||||||||||||| Sbjct 1047 TCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | | ||||| |||||| || ||||||||||||||||||||||||| Sbjct 1322 TCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGA 1381 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||||||||||| || || || ||||||| | || ||||| || Sbjct 1382 AAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGG 1441 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||| || || || |||| | || || || | | ||| ||| ||| ||| || Sbjct 1442 GATGCCCTCTTTGTCTTGGATTT-TAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCA 1500 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| | || || || | ||||| |||||||| ||||| Sbjct 1501 CTTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | |||||| | || | || ||||||||||| ||||||||||| | Sbjct 410 TCCACCGCGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGA 469 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||| ||||| ||||| || ||| |||| || | ||||| || ||| Sbjct 470 CAGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGG 529 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| |||||||| || | | ||| || | | | | |||||| ||||| Sbjct 530 AATGCCCTCCTTATCTTGGATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCCAC 589 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| |||| || || | ||| || ||||| || ||||| Sbjct 590 CTCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377899126477635