Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq48588 526 3e-144 seq111536 104 3e-17 seq289356 100 4e-16 seq94045 91.5 2e-13 >seq48588 Length=2845 Score = 526 bits (582), Expect = 3e-144 Identities = 1105/1627 (68%), Gaps = 55/1627 (3%) Strand=Plus/Plus Query 62028 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 62087 |||||| | ||||| | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 255 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 314 Query 62088 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 62147 |||||||| ||||||| ||| | |||| ||| ||||| || ||||||||| | Sbjct 315 TACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 374 Query 62148 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62207 || | || | || | ||| || || | |||||||||||| || || || ||||| || Sbjct 375 TAGTTAGGTTTAGCAACATGTATGTTGAAAGATTGACTTTGGTCTATAAACGCTCCTCTA 434 Query 62208 TCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCG 62266 || || ||||| | |||| ||| || ||| ||| ||||| | ||||| || || || Sbjct 435 TCAGCGGCCATCTGTATGGACGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 494 Query 62267 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATGGATCCACCATCTACCATAATCCT 62323 ||| || |||| || | ||| | ||| || || |||||| | ||||| Sbjct 495 CTT-ATTTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 553 Query 62324 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTT 62383 ||| || || || |||| |||||| | | || ||| | | || ||||| |||| Sbjct 554 ATTTTTCATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGTT 613 Query 62384 AACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62443 ||||| | ||||||||||| || ||||| | ||||||||| ||| | ||||| Sbjct 614 CACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAATGGTTC 673 Query 62444 CACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62503 | || ||| | || || | |||||| ||||| || ||||| ||||||||||| | ||| Sbjct 674 AAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTTGGCATAGGTGCTATCAA 733 Query 62504 TAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAA 62561 || | ||| | | ||| ||||| || || || ||||| || |||| |||||| Sbjct 734 TAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTTCCAA 791 Query 62562 AGATCCGACG-------GTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC 62614 || || | | || | ||| ||| || || ||||| | || || Sbjct 792 AGGTCTGTAGGAGTTTTGTCCCACA-------TATCATACTGGAGGATACCTTGGCTAGC 844 Query 62615 -GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCT 62673 | || |||| |||||| |||| ||||| || || |||| || |||||| || | Sbjct 845 TGGAC-TTCCTTGATATGTGCTGTATGCGCCTTCTTTTTCTGCTAATTCACAACTAGCTT 903 Query 62674 CTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGC 62733 |||||||||| |||||||| |||||||| || | | ||| || | ||||| | | Sbjct 904 CTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCAC 963 Query 62734 TATCAAATGGATAAT-TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCG 62792 | || | || || | | | | | ||| | || || | || ||||||||||||||| Sbjct 964 TTTCGTAAGG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCG 1022 Query 62793 ATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 62852 ||||||| || ||| |||| || ||| ||||| || | ||||||| | |||| ||| Sbjct 1023 ATAGGTCGGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCA 1082 Query 62853 ATAATTTTATTGAGATTT---CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA 62909 || | ||| || | |||| | ||||| ||||| | || || | ||| |||| Sbjct 1083 ATGACTTTGTTTAAATTTTGAGTCACAAT--CTTTG-TGATTTCTTTTAATTTTTTAAAA 1139 Query 62910 TCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCT 62969 | ||||| || | |||||| |||| | ||| | || || || || ||||| || Sbjct 1140 TTAAATCTATTATTTTCAACAAACTTGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCC 1199 Query 62970 ACCTCATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATA 63026 || |||| | || | | ||||| | | ||||||||||||||| ||||| || ||| Sbjct 1200 ACTTCAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATA 1256 Query 63027 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 63086 || || | ||||| |||||||||||| |||| || ||||||||||| | || |||| Sbjct 1257 GTGCCAAGATTTTTTTGATTACTCTTCCTGTTGCAAGCATCCTTATATAACATATATGGT 1316 Query 63087 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 63146 |||||||| || | |||| ||||||||| | ||||| | || |||| | | | Sbjct 1317 GTACCAGTCTCCACTTGAGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGA--CTT 1374 Query 63147 GATTTGTATCTCCTTTCTCT--TTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCC 63204 | ||| || | ||| ||| ||| ||| | ||| | | ||| || || ||||| Sbjct 1375 GTTTTATAAACCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCAT 1434 Query 63205 AAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63264 || | | | | |||||| |||| |||||||| | ||| ||| ||||||| Sbjct 1435 AACAGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCT---TCATCCT 1491 Query 63265 T---CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTC 63321 | |||| ||||||||| ||||| || ||||| | || ||| || ||||||| || Sbjct 1492 TTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTTGCTC 1551 Query 63322 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63381 | ||| || || ||||| ||||| || | ||| |||||| | | || || | ||||| Sbjct 1552 TCATTTCTTCCTTACCTGTGTTCTTCTTTAAATCTAGGAACTCAAATATGTCCGCATGCC 1611 Query 63382 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63441 | || || ||||| || || | | || || ||||||||||| || ||||||| |||| Sbjct 1612 AAGGCTCTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATC 1671 Query 63442 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTAC 63501 | || || || || || |||||||||||||| | | ||| ||||| | ||||| |||| Sbjct 1672 TGGCAGTATTGTTGTACACTCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGTAC 1731 Query 63502 CGGAGATATAGCCTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTG 63558 | | ||||| || ||| | || || || || || |||||| || || | Sbjct 1732 CAGCTATATAAGACCCCTGGGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCGG 1788 Query 63559 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCAT 63618 | |||||| |||||||| ||| ||||||| || ||| | || ||||| || ||||| | Sbjct 1789 CAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATACTATCGT 1848 Query 63619 CGATCAT 63625 | |||| Sbjct 1849 CTTTCAT 1855 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 || |||||||| || ||||| || ||| |||||||||||||||||||||||||||||||| Sbjct 2254 TTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 2313 Query 63867 GAAAAGTCTCGTTCGTAAATAAT 63889 ||| |||| || |||| ||| Sbjct 2314 TTAAAATCTCTATCATAAACAAT 2336 >seq111536 Length=3730 Score = 104 bits (114), Expect = 3e-17 Identities = 246/369 (67%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 155252 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTT 155309 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 2907 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTAT 2964 Query 155310 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 155369 ||||||| |||| || |||||| | || | ||||| ||||| ||| | || ||||| Sbjct 2965 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 3024 Query 155370 TCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 155429 ||||||||| || ||||| || ||| | | | ||||||||| | |||| Sbjct 3025 TCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 3084 Query 155430 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 155489 ||||| | || | ||||| || |||| ||||||||| |||| | | | | Sbjct 3085 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAAGCATTTCCTAAAGGAGCTGATTTGAT 3144 Query 155490 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGAAG 155546 |||||| ||||| | || | || || | ||| || ||| | || ||||| | Sbjct 3145 TTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTTGGTAC 3204 Query 155547 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGA 155606 |||||||| |||||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 3205 ATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 3264 Query 155607 CTGTTTATA 155615 || ||||| Sbjct 3265 TTGCTTATA 3273 >seq289356 Length=614 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || || || || |||| ||| ||||| ||||||||||| || | |||||||||||| Sbjct 511 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 452 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 ||||| | |||||| ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 451 GGATGATCTGTAGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 392 Query 64137 GTTACTCCATTATATATTCC 64156 ||||| ||| |||||| || Sbjct 391 GTTACACCAGAATATATGCC 372 >seq94045 Length=338 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 307 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 248 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || ||||| |||||||||||||||| ||||| || Sbjct 247 CATATGTCCGGATATTGGATTGGGAATATAACGAA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627357193927440