Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq48588 499 3e-136 seq94046 138 1e-27 seq296465 95.1 1e-14 >seq48588 Length=2845 Score = 499 bits (552), Expect = 3e-136 Identities = 1177/1760 (67%), Gaps = 27/1760 (2%) Strand=Plus/Plus Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864 |||| ||||| ||| | |||||| | | || |||||||| ||||||| |||| | || Sbjct 282 ATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAGTACATTCCTGTTTTTAAACCCATTTTC 341 Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924 || ||| ||||| || || ||||| | || |||| ||| | | || ||| | Sbjct 342 CAAGCGTGGAAATGAATCGACGTTAGTTTCCCATAGTTAGGTTTAGCAACATGTATGTTG 401 Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTT 36984 | ||||||||||| ||||||||||| ||||| || || ||||| | || || |||| Sbjct 402 AAAGATTGACTTTGGTCTATAAACGCTCCTCTATCAGCGGCCATCTGTATGG-ACGTTTT 460 Query 36985 T-GAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTAAA-- 37041 | || |||||||| || ||||| || | | | |||| | | || | | | | Sbjct 461 CAGTGAAATCTCCCATACGGTTTTGTACAAATCTCTTATTTCTTTAGGGATTTTTTCAAT 520 Query 37042 -TGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATT 37100 | ||| ||||| ||||| | | | ||| ||| || || || | || ||| | || Sbjct 521 TTCTTGTATAGATCCATTGTTGTATATAATAAGATTTTTCATATCTTCATCCCATAAATC 580 Query 37101 TCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATAC 37160 | | | || ||| || || | || || || |||| ||||||||||| || Sbjct 581 AGCCCGAGTCAAATCAGTCAGAAGATGATGGTTCACTACAGGAAATTCTCCAGATAAGAC 640 Query 37161 TCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATT 37218 ||||||| ||| |||| ||| | ||| ||||||||| || ||| | || | | ||| Sbjct 641 TCTTCTTTGGTAAATAT-TTGAT-GTAAATGGTTCAAAAGATTCAGTGTTGCCAAGAATT 698 Query 37219 TGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTA 37278 || | ||||| ||||| ||||| |||||||| | || ||| | ||| |||||| | Sbjct 699 TGTGCAGTAGAGGCAGTTGGCATAGGTGCTATCAATAGAGAATTGCGCAAACCATGTTTT 758 Query 37279 TTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATA 37338 || | | ||| || || ||| | ||| | ||||| || | || ||||||| Sbjct 759 GCTATCTTTTCTTTGAGGACAGCCCAGTTCCAAAGGTCTGTAGGAGTTTTGTCCCACATA 818 Query 37339 TCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAA 37398 ||||| || || ||||||| || |||||| | | |||||| || | || | Sbjct 819 TCATACTGGAGGATACCTTGGCTAGCTGGACTTCCTTGATATGTGCTGTATGCGCCTTCT 878 Query 37399 ATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGT 37458 ||| |||| ||| ||||||| ||||| ||| ||||||| |||||||| || |||||| Sbjct 879 TTTTCTGCTAATTCACAACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATTTGT 938 Query 37459 ATATTTAATATTTTTGCTTCTTCGCTATCG-AATGCATAGCCCAATAATATAAACACATC 37517 ||| | | | |||||| || || ||| || | || | || || | ||| ||| Sbjct 939 TGATTAAGGAGTATTGCTTTCTCACTTTCGTAAGGTAT-TCTCATCAACACAAATGTATC 997 Query 37518 AGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTC 37577 |||| |||||||||||| ||||| || |||| || || |||| || | | ||| Sbjct 998 TGCCATACCCTGAACACCAATACCGATAGGTCGGTGCCTCATATTTGAAGTTTTTGCTTC 1057 Query 37578 TATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGT 37637 || |||||| | || | ||| || | ||| |||| ||||| | | || || || Sbjct 1058 AGGGACAGGATAAAAGTTAACATCAATGACTTTGTTTAAATTTTGAGTCACAATCTTTGT 1117 Query 37638 AATTATTCTCAACTTGTCGAACATAAATACGTTATTATTAACAAATTTACTCAACGAAAT 37697 ||| | | || || | || ||||| ||||| | |||||| || | | | || Sbjct 1118 GATTTCTTTTAATTTTTTAAAATTAAATCTATTATTTTCAACAAACTTGTTAAGTGCTAT 1177 Query 37698 AGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACA 37757 || | || || || || || ||||||||||| | | |||| | || ||| || || Sbjct 1178 GGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTGCA 1237 Query 37758 GAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATC 37817 ||||| || || |||| || || | ||| ||||||| || | || |||| ||| Sbjct 1238 AAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTCCTGTTGCAAGCATC 1297 Query 37818 TTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAA 37877 ||||||| ||||| || || || || | |||||| || ||||| || |||||||| Sbjct 1298 CTTATATAACATATATGGTGTACCAGTCTCCACTTGAGCTTCTATAATTGACTTCCATAA 1357 Query 37878 ACTTCTT--GCTTTAACGATCGCTTT----AAtttttttCTTTGTTTCGTATTCTATATA 37931 |||| ||| | || | | ||| | |||||||| ||| |||| ||| Sbjct 1358 --CTCTTGAGCTCTGAC--TTGTTTTATAAACCGTTTTTCTT--CTTCATATTTGGCATA 1411 Query 37932 TAATTTGTTAAAATCATTCCCCCAT-ACA-TCGCATAATCCTGGACATTCGCATGGACAC 37989 || || | ||| || | | |||| ||| || | || ||||| || |||||| Sbjct 1412 TAGTTCTTCAAATTCCT--CTCCATAACAGTCAGCGAGGCCAGGACAATCATGAGGACAC 1469 Query 37990 ATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAAT 38049 || ||| ||| |||||||| |||||||| | || |||||| | ||| |||| |||||| Sbjct 1470 ATGAGACTCCAATCTTCATCCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAG 1529 Query 38050 GCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGA 38109 ||| ||| | ||| | | ||| |||||| || ||| ||||| |||| ||| Sbjct 1530 GCATAAAACAGTTCTCTTGCTCTCATTTCTTCCTTACCTGTGTTCTTCTTTAAATCTAGG 1589 Query 38110 AAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTA 38169 || || ||||| || || ||||| || |||| ||||| | | ||| || || | ||| Sbjct 1590 AACTCAAATATGTCCGCATGCCAAGGCTCTAAGTAAATTGCAAATGCACCGGGACGTTTG 1649 Query 38170 TCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATA 38229 | || || |||| | |||||| | || || || || | ||| ||||| || |||| | Sbjct 1650 TTTCCACCTTGATCTACATATCTGGCAGTATTGTTGTACACTCTCAACATTGGCACTAGA 1709 Query 38230 CCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATC 38289 ||||| || || || |||| | |||||||| |||| |||| || | | | Sbjct 1710 CCATTTGAAACCCCATTAGTACCAGCTATATAAGACCCCTGGGCTCTGATGCAATGTGTA 1769 Query 38290 GACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAAT 38349 || ||||| ||||| ||| ||| || ||||| || ||||||||||| |||||||| Sbjct 1770 TGTAAACCTATGCCACCGGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAA 1829 Query 38350 ATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAAT 38409 |||||||| ||||| || || || || | || | || ||| || | || ||| Sbjct 1830 ATACCTTCAATACTATCGTCTTTCATAGCTATAAGGAAGCAAGAGGAAAGCTGTGGCCTC 1889 Query 38410 GGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA 38469 || || | || || | |||||| ||||||| | || |||| || |||| | Sbjct 1890 GGTGTAGCTGCTGAGAACAGTGTAGGGCTTGCATGTGTAAAATATTTCTCTGACATCATA 1949 Query 38470 TTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATT 38529 ||||| || | ||| || ||| || || | || ||||| |||| || || ||||| Sbjct 1950 TTATAAGTATTGATTGCACTATCAATGTCTTCACCATGAATGCCTATGGAGACTCTCATA 2009 Query 38530 AGCATATGTTGTGGTCTTTC 38549 ||||| ||||| |||||||| Sbjct 2010 AGCATGTGTTGAGGTCTTTC 2029 >seq94046 Length=398 Score = 138 bits (152), Expect = 1e-27 Identities = 165/220 (75%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||||| |||||| || ||||||||| ||||| |||||||||| |||||||||||| Sbjct 141 ATCTCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGC 200 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTT 12008 |||||||| |||||||| || | || || | ||| || || || | || | | Sbjct 201 AATTTGAAAACCATAGAAGCACCTGGCTTCAG-TCACTTGAACCTCTTGTGAGAAACGCT 259 Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068 || | || |||||||| |||||||||||| || ||||| || |||| | |||||| | Sbjct 260 CCACCAAGTTCTCATTAACAATACCATCAGAAGCCGCAAAGAAGGCTAAGACATGTTTGA 319 Query 12069 TAAAGTATTTTTCG---TCTTTAGTTAATTTATCCCAATC 12105 |||| | ||| ||| |||| ||||| | |||||||| Sbjct 320 TAAAATGTTTCTCGCAATCTT---TTAATGTCTCCCAATC 356 >seq296465 Length=573 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/176 (72%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || |||||||| || |||||||||||||||| ||||||||||| | ||||||||| Sbjct 140 ATAAGTTCATTGCTGAAAGTTAATCCGGGCATCAGCCCTCGTTTTTTCAACCAAAATATT 199 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | |||||| || || || ||||||||||| || || ||||| || | | | |||| Sbjct 200 GAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACCGCCGCAAAAGCGATAATACGTTCT 259 Query 11786 CCATATA---CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTT 11838 ||| ||| | | ||||| ||||| | | ||||| || || ||||| || Sbjct 260 CCAAATATGGCAGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTGCCTTCTTCTT 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466694490299120