Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq48588 506 3e-138 seq289356 95.1 2e-14 seq111536 95.1 2e-14 >seq48588 Length=2845 Score = 506 bits (560), Expect = 3e-138 Identities = 1095/1620 (68%), Gaps = 41/1620 (3%) Strand=Plus/Plus Query 64821 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 64880 |||||| | ||||| | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 255 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 314 Query 64881 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 64940 |||||||| ||||||| ||| | |||| ||| ||||| || ||||||||| | Sbjct 315 TACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 374 Query 64941 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 65000 || | || | || | ||| || || | |||||||||||| || || || ||||| || Sbjct 375 TAGTTAGGTTTAGCAACATGTATGTTGAAAGATTGACTTTGGTCTATAAACGCTCCTCTA 434 Query 65001 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 65059 || || ||||| | |||| ||| || ||| ||| ||||| | ||||| || || || Sbjct 435 TCAGCGGCCATCTGTATGGACGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 494 Query 65060 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATGGATCCACCATCTGCCATAATCCT 65116 ||| || |||| || | ||| | ||| || || |||||| | ||||| Sbjct 495 CTT-ATTTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 553 Query 65117 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 65176 ||| || || || |||| |||||| | | || ||| | | || ||||| | || Sbjct 554 ATTTTTCATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGTT 613 Query 65177 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 65236 ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||||| Sbjct 614 CACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAATGGTTC 673 Query 65237 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 65296 | ||| ||| | || || | |||||| ||||| || ||||| ||||||||||| | ||| Sbjct 674 AAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTTGGCATAGGTGCTATCAA 733 Query 65297 TAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAA 65354 || | ||| | | ||| ||||| || || || ||||| || |||| |||||| Sbjct 734 TAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTTCCAA 791 Query 65355 AGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGA 65413 || || | || || || ||||| | || || | || Sbjct 792 AGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTAGCTGGAC-T 850 Query 65414 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 65473 |||| |||||| ||||| ||||| || || |||| ||||||||| || |||||||| Sbjct 851 TCCTTGATATGTGCTGTATGCGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGC 910 Query 65474 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 65533 ||| |||||||| ||||| || || | | ||| || | ||||| | || || | Sbjct 911 ACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGTA 970 Query 65534 TGGATAAT-TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 65592 || || | | | | | ||| | ||||| | || |||||||||||||||||||||| Sbjct 971 AGG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGATAGGTC 1029 Query 65593 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 65652 || ||| |||| || ||| ||||| || | ||||||| | |||| ||| || | || Sbjct 1030 GGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTT 1089 Query 65653 TATTGAGATTT---CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 65709 | || | |||| | ||||| ||||| | || || | ||| ||||| ||||| Sbjct 1090 TGTTTAAATTTTGAGTCACAAT--CTTTG-TGATTTCTTTTAATTTTTTAAAATTAAATC 1146 Query 65710 GCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 65769 | || | |||||| |||| | ||| | || || || || || || || || |||| Sbjct 1147 TATTATTTTCAACAAACTTGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCAT 1206 Query 65770 TAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 65826 | || | | ||||| | | ||||||||||||||| ||||| || || || || | Sbjct 1207 ---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAA 1263 Query 65827 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAG 65886 ||||| |||||||||||| |||| || ||||||||||| | || |||| ||||||| Sbjct 1264 GATTTTTTTGATTACTCTTCCTGTTGCAAGCATCCTTATATAACATATATGGTGTACCAG 1323 Query 65887 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT 65946 | || | |||| ||||||||| | ||||| | || |||| | | | | ||| | Sbjct 1324 TCTCCACTTGAGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGA--CTTGTTTTAT 1381 Query 65947 --ATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 66004 | | |||||| ||| ||| | ||| | | ||| || || ||||| || | Sbjct 1382 AAACCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCATAACAGTC 1441 Query 66005 GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CAC 66061 | | |||||||| |||| |||||||| | ||| ||| |||||||| || Sbjct 1442 AGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCT---TCATCCTTTTCTAC 1498 Query 66062 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTC 66121 || ||||||||| ||||| || ||||| | || ||| | ||||| | ||| ||| Sbjct 1499 TCTTTTCATAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTTGCTCTCATTTC 1558 Query 66122 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTC 66181 || || ||||| ||||| || | ||| |||||| | | || || |||||| || || Sbjct 1559 TTCCTTACCTGTGTTCTTCTTTAAATCTAGGAACTCAAATATGTCCGCATGCCAAGGCTC 1618 Query 66182 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 66241 ||||| || || | | || || ||||||||||| || ||||||| ||||| || || Sbjct 1619 TAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGT 1678 Query 66242 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGAT 66301 || || || |||||||||||||| | | |||||| || ||||| || || | || Sbjct 1679 ATTGTTGTACACTCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGTACCAGCTAT 1738 Query 66302 ATAGCTTCCACTTGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 66358 ||| || || | || || || || || |||||| || || || ||| Sbjct 1739 ATAAGACCCCTGGGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCGGCAGATTT 1795 Query 66359 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 66418 ||| |||||||| ||| ||||||| |||||| | || || || |||||||| || |||| Sbjct 1796 AGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATACTATCGTCTTTCAT 1855 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 66599 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 ||| |||||||| || ||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 2253 CTTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 2312 Query 66659 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 66709 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 2313 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2363 >seq289356 Length=614 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 66810 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCC 66869 || || || ||||| |||| ||| |||| |||||||| || || | |||||||||||| Sbjct 511 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 452 Query 66870 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 66929 ||||| | |||||| ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 451 GGATGATCTGTAGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 392 Query 66930 GTTACTCCATTATATATTCC 66949 ||||| ||| |||||| || Sbjct 391 GTTACACCAGAATATATGCC 372 >seq111536 Length=3730 Score = 95.1 bits (104), Expect = 2e-14 Identities = 244/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 158443 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATT 158500 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 2907 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTAT 2964 Query 158501 TAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGT 158560 ||||||| |||| || |||||| |||| | ||||| ||||| || | || ||||| Sbjct 2965 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 3024 Query 158561 TCATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 158620 ||||||||| || ||||| | ||| | | | ||||||||| | |||| Sbjct 3025 TCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 3084 Query 158621 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 158680 ||||| | || | ||||| || |||| ||||||||| |||| | | | | Sbjct 3085 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAAGCATTTCCTAAAGGAGCTGATTTGAT 3144 Query 158681 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTCCCGTTTGGAAG 158737 |||||| ||||| | || | || || | ||| || ||| | || ||||| | Sbjct 3145 TTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTTGGTAC 3204 Query 158738 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGA 158797 |||||||| |||||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 3205 ATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 3264 Query 158798 CTGTTTGTA 158806 || || || Sbjct 3265 TTGCTTATA 3273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655601623275320