Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6932 188 7e-43 seq6747 118 1e-21 seq4418 111 2e-19 >seq6932 Length=2340 Score = 188 bits (208), Expect = 7e-43 Identities = 762/1174 (65%), Gaps = 50/1174 (4%) Strand=Plus/Plus Query 20330 CAATCTGCCGGTAATCGACCACACCGTCTTCCCAAGTGCCGGCGACGGGACCGGTGGCCG 20389 |||||| || |||||| ||||| ||||||| |||||| || ||| || || || || Sbjct 471 CAATCTCCCTGTAATCAACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGT 530 Query 20390 TGCCCGCGAAAGGATTATCACTATCGC--TCTTCA-CACCGGTCCAACCGCGCCCGTACA 20446 |||| | ||| ||| | | ||| || | | | || |||||||| || || |||| Sbjct 531 TGCCTGTGAAGGGAATGTTGTCTTCGTAATCATGAACGCCAGTCCAACCACGACCATACA 590 Query 20447 TTGCTACACCCAGTGCAATTTTACTT----TTTGGTACGTGTTGCGCGAGCAACGCTTCT 20502 | || ||||| | | |||| || ||| || | | ||| || | ||| || | Sbjct 591 TGGCAACACCTACTACAATCTT-CTTAGGATTCACTCCCTGT---GCCAACAAGTATTTT 646 Query 20503 ACGGCACGATCTGCGCAATAAGGTTCGTCGGGTTTCCAGGCGGGTGCAAACAATGCGGTT 20562 || | || | |||| ||| | ||| |||| || || || |||||| ||| Sbjct 647 ACTCCGAAGTCAGATGTGTAAGTTTCCTTGGGACTCCATGCAGGCGCGTACAATGGTGTT 706 Query 20563 TGATGTCCCAGATCCGTAGTGGACCAGGCTCCTTTGAAATCGTACGACATTAAGAATATG 20622 |||||||| ||| | | ||||||||||| ||||| || || ||| ||||| || Sbjct 707 TGATGTCCAAGAGTATCATTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATA 766 Query 20623 GTATCGAGGTATTTTTGCGCTTCGGTGTAATCGACCACAGCAATCTTATCGTCGCCCGCG 20682 ||| | || ||||| || | | ||| || || || || ||||| || | | Sbjct 767 TGATCCATATAATTTTGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAG 826 Query 20683 CTTATCGCGCTCGTCAACAGATAGTA---ACGATTGTGATGTATGCCGAGGGCG--TCGA 20737 || || || || || || | || ||| | | || ||| || |||| Sbjct 827 CTAATAGCAGAAGTTAATTCGTATTTCTTACCATTCTTA-----GCTGAGAGCTCATCGA 881 Query 20738 GCATGCCGCGAAGTTCACGCAGCAGGATCGTGTACGTGGCTCGATCGCGTTCGGCGTCGC 20797 |||| | || | ||| || || | || | | ||| ||| | | | Sbjct 882 GCATCTCACGTAATTCTTTCATCAAACTTACATAACAATCACCATC---TTCTGGGCTAC 938 Query 20798 CGACATTGGGGTTCGCGCCATTGCCGCCCGGAAACTCCCAATCAATGTCGACGCCATCAA 20857 ||| || ||||| || || || || || || ||||||||||| || || || ||||||| Sbjct 939 CGAGATCAGGGTTAGCACCTTTACCACCAGGGAACTCCCAATCGATATCAACACCATCAA 998 Query 20858 AGAATTTCCACGTTTCTAGATACTCTTGGACCGAATCGATAAA-CGT-TTGGCGCACGAT 20915 |||||||||| ||| ||| |||| | || || | | ||| ||| || | | ||| Sbjct 999 AGAATTTCCATGTTAGAAGAAACTCCTTAACTGACTGCACAAATCGTGTTCTCTTA-GAT 1057 Query 20916 CTTGTCGTGCATATGGAAAAATGGGTCCGAAAGTGTCCAGCCCCCGATAGACGGTAACAC 20975 ||||| | | ||| || || || | || ||||| || || ||||| || | | Sbjct 1058 -TTGTCAACTAAAAAGAAGAAAGGATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAAT 1116 Query 20976 TTTGAGATGCGGGTTCGCCAATTTCGCGGCCATAAGTTGGCCAAAGTTGCCTTTGTACGG 21035 || | | ||| || ||| | ||| | ||||||||||||||||||||| || Sbjct 1117 CTTCAATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGG 1176 Query 21036 TTCGTTCCATGCGCTGACA--CCTTTCTGGGGTTTCTGTATGGCCGCCCACGGATCGTGA 21093 |||||||| || |||| ||||| || ||||| |||| || ||||| |||||||| Sbjct 1177 CTCGTTCCA--CGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGG 1234 Query 21094 ATGGCCACCTTAAAGTCGGCACGGCCCGCGCACGAACGTTGCAACGCTTCGAAACTGCCC 21153 || | || || ||||| ||||||| || || || |||| |||| ||||||||| Sbjct 1235 ATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCT 1294 Query 21154 GGGA-CACTTTTGAGCGCATCGTTGATGCCTTCGCCTCCGCACATGGGCACGAAACCGTA 21212 || | ||||| ||| || || ||||| || || ||||| || || | || || || Sbjct 1295 TCGATCTCTTTTAAGC-TGTCATTTATGCCATCACCGCCGCAAATTGGAATAAAGCCATA 1353 Query 21213 CAACAAATGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGGCGCGGATACAC 21272 | |||||| | | || ||| | || | ||| ||||| || | | ||||| || Sbjct 1354 GAGCAAATGAGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTTCTAGGATAGAC 1413 Query 21273 ACCCCATTCGACAAAGTATGCTCCAATGATCTTGTCCGAGCGCTTT--TCGAAACGTTTA 21330 ||||||||| || ||||| || || | | ||| ||| || ||| | || | ||| Sbjct 1414 ACCCCATTCTACGAAGTAGGCGCCTA-CAACTTTTCC-AGATGTTTGCTTAAATGGCTTA 1471 Query 21331 TTGTTTTCGAGATAATCGTAGA--CGAGCGGCGCGAGATGCGAGCCGTCCGTGTCGGCCA 21388 || ||||| ||| ||| | | || |||| | ||| || || || || |||| Sbjct 1472 TTTTTTTC-TCCCAAT-GTATATTCCAGAGGCGGTAAATGACTTCCATCAGTATCAGCCA 1529 Query 21389 CGACGACTTTAACCGGTGCGCTAG-TCGAA---CAGCCGTCGACGTTGCACAGTTTCACA 21444 |||| | || ||||| | | | | ||| |||||||| | ||||| |||| ||| Sbjct 1530 CGACAATTT----CGGTGGGATCGCTGGAACTGCAGCCGTCTTCATTGCAAAGTTCCACT 1585 Query 21445 GTCATATCGTACTTGCCGCCCTTAGTAACGGGAA 21478 ||||| | ||| | || || || | |||||||| Sbjct 1586 GTCATTTGGTATCTTCCACCTTTCGAAACGGGAA 1619 >seq6747 Length=1699 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||||| ||||| |||||||||||||| || ||| Sbjct 1323 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAA 1382 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | || || ||||| |||| ||||| |||||||| || || Sbjct 1383 AGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGG 1442 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| |||||||| |||||| ||||| | ||| | || || | ||| ||||| Sbjct 1443 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1502 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || | ||||| || || || |||||| Sbjct 1503 TCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCATA 1550 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | |||||| ||||| || | ||||| || ||||||||||||||||| Sbjct 1095 CCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCAGAT 1154 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| || ||||| |||||| | || || | ||| || || || || Sbjct 1155 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGA 1214 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| ||| || | | ||| | ||||| | || || ||| Sbjct 1215 ATACCTTCTTTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGTTCTACC 1274 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | || || || || || ||||| Sbjct 1275 TCTAAGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1321 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||||| || | ||||| |||||||| ||||| || || | Sbjct 411 CCACCGCGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGAC 470 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || | ||||||||||||| |||| ||||| || || || || || Sbjct 471 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 530 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || || || ||| ||| || | | ||| | ||||||| ||||||||| Sbjct 531 ATGCCCTCCTTATCTTGGATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACC 590 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | || || || || | || || || || || |||||| || Sbjct 591 TCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACAAAGATCTGCATACCT 641 >seq4418 Length=3433 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || | || ||||| ||||||||| | ||||| ||||||||||| |||||||| Sbjct 632 CCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGAT 573 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | ||||| | |||||| || || | ||||| | || || || ||||| Sbjct 572 AGAGTGCGTCCA-TCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGG 514 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| |||||| ||| | | ||| | ||| || | | |||| Sbjct 513 AATACCTTCCTTGTC-TTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 455 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | |||||||| |||| || ||||| || |||||||| Sbjct 454 CTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| ||||| ||||| ||||| || ||||| | ||| || ||||| Sbjct 1071 AACAAGGTGAAGGGTAGATTCTTTCTGAATATTGTAATCAGATAATGTTCTTCCATCTTC 1012 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 || || ||||| ||| | |||| | || || || || || |||||||||||||| | Sbjct 1011 AAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTC-CT 953 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||||| || | | ||| | ||| || | | || || || | || | || | Sbjct 952 GAATTTTTGCCTTGACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTT 893 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| |||| |||||| ||||| |||||||| Sbjct 892 TGCCAGTCAGCGTTTTCACGAAAATTTGCAT 862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494126107381600