Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq48588 535 6e-147 seq289356 100 4e-16 seq111536 100 4e-16 seq94045 95.1 2e-14 seq94046 87.8 3e-12 >seq48588 Length=2845 Score = 535 bits (592), Expect = 6e-147 Identities = 1102/1619 (68%), Gaps = 39/1619 (2%) Strand=Plus/Plus Query 78700 ATCTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 78759 || ||| | ||||| | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 255 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 314 Query 78760 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAA 78819 |||||||| ||||||| ||| | |||| ||| |||||| || ||||||||| | Sbjct 315 TACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 374 Query 78820 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 78879 || | || | || | ||| || || | |||||||||||| || || || ||||| || Sbjct 375 TAGTTAGGTTTAGCAACATGTATGTTGAAAGATTGACTTTGGTCTATAAACGCTCCTCTA 434 Query 78880 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 78938 || || ||||| | |||| ||| || ||| ||| ||||| | ||||| || || || Sbjct 435 TCAGCGGCCATCTGTATGGACGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 494 Query 78939 CTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATCCT 78995 |||| | |||| || | ||| | |||| | || |||||| | ||||| Sbjct 495 CTTATT-TCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 553 Query 78996 ATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 79055 ||| || || ||||||| |||||| | | || ||| | | || ||||| | || Sbjct 554 ATTTTTCATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGTT 613 Query 79056 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTC 79115 ||||| ||||||||||||| || ||||| | ||||||||| ||| ||||||| Sbjct 614 CACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAATGGTTC 673 Query 79116 CACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAA 79175 | |||||| | || || | |||||| ||||| || || |||||||||||||| | ||| Sbjct 674 AAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTTGGCATAGGTGCTATCAA 733 Query 79176 TAAACTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAA 79233 || | ||| | | ||| ||| | || || || ||||| || |||| | |||| Sbjct 734 TAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTTCCAA 791 Query 79234 AGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGAT 79293 || || | || | ||| | |||||| || || ||||| | ||||| | Sbjct 792 AGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTAGCTGGACTT 851 Query 79294 CCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCT 79353 ||| ||||| || | ||||| ||||| |||||||||||||| || |||||||| Sbjct 852 CCTTGATATGTGCTGTATGCGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCA 911 Query 79354 CCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAAT 79413 || |||||||| ||||| || || | | ||| || | ||||| || || | Sbjct 912 CCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGTAA 971 Query 79414 GGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 79472 || || | | | | | ||| | ||||| | || |||||||||||||||||||||| Sbjct 972 GG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGATAGGTCG 1030 Query 79473 ATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 79532 || ||| |||| ||| ||| ||||| || | ||||||| | |||| ||| || | ||| Sbjct 1031 GTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTTT 1090 Query 79533 ATTGAGATTCCTGACTATTA--CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGT 79590 || | ||| ||| | | ||||| | || |||| ||| ||||| ||||| Sbjct 1091 GTTTAAATTT-TGAGTCACAATCTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAATCTA 1148 Query 79591 CCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTA 79650 || | |||||| |||| | || | || || || || || || || || |||| Sbjct 1149 TTATTTTCAACAAACTTGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCAT-- 1206 Query 79651 GCATCCGCA---TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAA 79707 | || | | ||||| | | |||||||| || || ||||| ||||| || || | | Sbjct 1207 -CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGA 1265 Query 79708 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTT 79767 |||| |||||||||||| |||| || ||||||||||| | || | || |||||||| Sbjct 1266 TTTTTTTGATTACTCTTCCTGTTGCAAGCATCCTTATATAACATATATGGTGTACCAGTC 1325 Query 79768 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTT-TATTATAGAC 79821 || | |||| ||||||||| | ||||| | || |||| ||| | ||||| || Sbjct 1326 TCCACTTGAGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTTGTTTTATAAAC 1385 Query 79822 TTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACA 79881 || |||||| ||| |||| | ||||| | ||| || || ||||| || Sbjct 1386 C-GT-----TTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCATAACAG 1439 Query 79882 TCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACT 79941 || | | |||||||| || | ||||||||| | ||| ||| |||| | | |||| Sbjct 1440 TCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCTTCATCCTTTTCTACT 1499 Query 79942 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCC 80001 | ||||||||| ||||| || ||||| | || ||| || ||||| | ||| || Sbjct 1500 CTTTTCATAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTTGCTCTCATTTCT 1559 Query 80002 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 80061 || || ||||| ||||| || | ||| |||||| | | || || | |||||| || || Sbjct 1560 TCCTTACCTGTGTTCTTCTTTAAATCTAGGAACTCAAATATGTCCGCATGCCAAGGCTCT 1619 Query 80062 AAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 80121 ||||| || || | | || || ||||||||||| || ||||||| ||||| || || Sbjct 1620 AAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTA 1679 Query 80122 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATA 80181 || || || |||||||||||||| | | |||||| || ||||| || || | ||| Sbjct 1680 TTGTTGTACACTCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGTACCAGCTATA 1739 Query 80182 TAGCTTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 80238 || || ||| | || || || || || |||||| || || || |||| Sbjct 1740 TAAGACCCCTGGGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCGGCAGATTTA 1796 Query 80239 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT 80297 || |||||||| ||| ||||||| |||||| | || || || || ||||| || |||| Sbjct 1797 GAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATACTATCGTCTTTCAT 1855 Score = 96.9 bits (106), Expect = 5e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 80478 CTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537 ||| || ||||| || ||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 2253 CTTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 2312 Query 80538 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 80588 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 2313 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2363 >seq289356 Length=614 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 80689 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 || || || || || |||| ||| |||| ||||||||||| || |||||||||||||| Sbjct 511 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 452 Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808 ||||| | |||||| ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 451 GGATGATCTGTAGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 392 Query 80809 GTTACTCCATTATATATTCC 80828 ||||| ||| |||||| || Sbjct 391 GTTACACCAGAATATATGCC 372 >seq111536 Length=3730 Score = 100 bits (110), Expect = 4e-16 Identities = 245/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 173691 TTATGACTCCA--ATTAATCCCATGTTAGCAGAATCATGTGATTCTGTCAATAAGGCGTT 173748 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 2907 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTAT 2964 Query 173749 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 173808 ||||||| |||| || |||||| | || | ||||| ||||| ||| | || ||||| Sbjct 2965 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 3024 Query 173809 TCATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 173868 ||||||||| || ||||| | ||| | | | ||||||||| | |||| Sbjct 3025 TCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 3084 Query 173869 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCAT 173928 ||||| | || | ||||| || |||| ||||||||| |||| | | | || Sbjct 3085 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAAGCATTTCCTAAAGGAGCTGATTTGAT 3144 Query 173929 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGAAG 173985 |||||| ||||| | || | || || | ||| || ||| | || ||||| | Sbjct 3145 TTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTTGGTAC 3204 Query 173986 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGA 174045 |||||||| |||||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 3205 ATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 3264 Query 174046 CTGTTTGTA 174054 || || || Sbjct 3265 TTGCTTATA 3273 >seq94045 Length=338 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || |||| ||||||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 307 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 248 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 || ||||| |||||||||||||||| ||||| || Sbjct 247 CATATGTCCGGATATTGGATTGGGAATATAACGAA 213 >seq94046 Length=398 Score = 87.8 bits (96), Expect = 3e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 50212 TCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 50271 || ||| |||| | | ||| || || || || | | ||||| || ||||||| ||| Sbjct 133 TCCTTAGGATCTCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTT 192 Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331 || || || || ||||| || ||||| || || || || || | || || ||| | Sbjct 193 TCCATAGCAATTTGAAAACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAG 252 Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 50391 || || || | || || ||||| || || || ||| || ||||| || || || ||| Sbjct 253 AAACGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGCCGCAAAGAAGGCTAAGACA 312 Query 50392 TGTTTTATAAAATGTTTTTCG 50412 ||||| ||||||||||| ||| Sbjct 313 TGTTTGATAAAATGTTTCTCG 333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715462855997720