Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq48588 544 1e-149 seq289356 95.1 2e-14 seq111536 95.1 2e-14 seq94045 95.1 2e-14 >seq48588 Length=2845 Score = 544 bits (602), Expect = 1e-149 Identities = 1093/1611 (68%), Gaps = 23/1611 (1%) Strand=Plus/Plus Query 70783 ATTTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAG 70842 ||||| | ||||| | ||||||||||| | | | ||| | ||| || |||| ||| Sbjct 255 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 314 Query 70843 TACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 70902 ||||| |||||||||| ||| | |||| ||| ||||| || ||||||||| | Sbjct 315 TACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 374 Query 70903 TAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTG 70962 ||| |||| | || | || || || | || |||||||| || || || ||||| || Sbjct 375 TAGTTAGGTTTAGCAACATGTATGTTGAAAGATTGACTTTGGTCTATAAACGCTCCTCTA 434 Query 70963 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 71021 || || ||||| | |||| ||| || ||| ||| ||||| | ||||| || || || Sbjct 435 TCAGCGGCCATCTGTATGGACGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 494 Query 71022 CTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCA-ATAATCC 71077 |||| | |||| || | ||| | |||| | || |||||| | || | ||||| Sbjct 495 CTTATT-TCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGT-TGTATATAATAA 552 Query 71078 TATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGAT 71137 |||||| || ||||||| |||||| | | || ||| | | || |||||| | | Sbjct 553 GATTTTTCATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGT 612 Query 71138 TAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTT 71197 | ||||| ||||||||||||| || ||||| | ||||||||| ||| | |||| Sbjct 613 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAATGGTT 672 Query 71198 CCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 71257 | | || ||| | || || | |||||| ||||| || ||||| ||||||||||| | || Sbjct 673 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTTGGCATAGGTGCTATCA 732 Query 71258 ATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAA 71317 ||||| ||| | | ||||||| | || || ||||| || |||| ||||||| Sbjct 733 ATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTTCCAAA 792 Query 71318 GATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATC 71377 | || | || || || | ||||| || Sbjct 793 GGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTAGCTGGACTTC 852 Query 71378 CTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTC 71437 || |||||| ||||| ||||||||||| |||| ||||||||| || |||||||| | Sbjct 853 CTTGATATGTGCTGTATGCGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCAC 912 Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATG 71497 |||||||||| ||||| || || | | ||| || | ||||| | || || | | Sbjct 913 CATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGTAAG 972 Query 71498 GATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 | || | | | | | ||| | ||||| | || ||||| |||||||||||||||| | Sbjct 973 G-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGATAGGTCGG 1031 Query 71557 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 71616 || ||| |||| ||| ||| ||||| || | ||||||| | |||| ||| || | ||| Sbjct 1032 TGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTG 1091 Query 71617 TTGAGATTTCTGACTATTA--CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCC 71674 || | |||| ||| | | ||||| | || |||| ||| ||||| |||||| Sbjct 1092 TTTAAATTT-TGAGTCACAATCTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAATCTAT 1149 Query 71675 CATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 71734 || | |||||| ||| | || | || || || || || || || || |||| Sbjct 1150 TATTTTCAACAAACTTGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCAT--- 1206 Query 71735 CATCGGCA---TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 71791 | || | | ||||| | || |||||||||||||| ||||| || || || || | || Sbjct 1207 CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGAT 1266 Query 71792 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTT 71851 ||| |||||||||||| |||| || ||||||||||| | ||| | || |||||||| | Sbjct 1267 TTTTTTGATTACTCTTCCTGTTGCAAGCATCCTTATATAACATATATGGTGTACCAGTCT 1326 Query 71852 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATC 71911 | | |||| ||||||||| | ||||| | || |||| | | | || | | | Sbjct 1327 CCACTTGAGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTTGTTTTATAAACC 1386 Query 71912 TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTA 71971 |||||| ||| |||| | ||||| | ||| || || ||||| || | | | Sbjct 1387 GTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCATAACAGTCAGCGA 1446 Query 71972 ATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCA 72031 |||||||| |||| |||||||| | ||| ||| |||| | | ||||| ||||| Sbjct 1447 GGCCAGGACAATCATGAGGACACATGAGACTCCAATCTTCATCCTTTTCTACTCTTTTCA 1506 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 |||| ||||| || ||||| | || ||| || ||||| | ||| || || || | Sbjct 1507 TAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTTGCTCTCATTTCTTCCTTAC 1566 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 |||| ||||| || | ||| |||||| | | || || | |||||| || || ||||| | Sbjct 1567 CTGTGTTCTTCTTTAAATCTAGGAACTCAAATATGTCCGCATGCCAAGGCTCTAAGTAAA 1626 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 | || | | || || ||||||||||| || ||||||| ||||| || || || || | Sbjct 1627 TTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTGT 1686 Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271 | |||||||||||||| | | |||||| || | ||||| || || | ||||| | Sbjct 1687 ACACTCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGTACCAGCTATATAAGACC 1746 Query 72272 CACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 | ||| | || | || || || |||||| || || || |||||| ||||| Sbjct 1747 CCTGGGCTCTGATGCAATGTGTAT--GTAAACCTATGCCACCGGCAGATTTAGAAATTAA 1804 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 ||| ||| ||||||| |||||| | || || || |||||||| || |||| Sbjct 1805 TGCACATTGTTTTAAAGTATCAAAAATACCTTCAATACTATCGTCTTTCAT 1855 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 72561 CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 ||| || ||||| || ||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 2253 CTTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 2312 Query 72621 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTT 72671 | ||| |||| || |||| ||| | || | | ||| ||||| | ||| Sbjct 2313 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2363 >seq289356 Length=614 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 72772 ttttttgtttCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 || || || || || |||| ||| |||| ||||||||||| || | |||||||||||| Sbjct 511 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 452 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 ||||| | |||||| ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 451 GGATGATCTGTAGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 392 Query 72892 GTTACTCCATTATATATTCC 72911 ||||| ||| |||||| || Sbjct 391 GTTACACCAGAATATATGCC 372 >seq111536 Length=3730 Score = 95.1 bits (104), Expect = 2e-14 Identities = 221/331 (67%), Gaps = 7/331 (2%) Strand=Plus/Plus Query 165040 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCGTT 165097 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 2907 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTAT 2964 Query 165098 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 165157 ||||||| |||| || |||||| | || | ||||| ||||| ||| | || ||||| Sbjct 2965 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 3024 Query 165158 TCATaaaaaaaaTAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 165217 ||||||||| || ||||| | ||| | | | ||||||||| | |||| Sbjct 3025 TCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 3084 Query 165218 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 165277 ||||| | || | ||||| || |||| ||||||||| |||| | | | | Sbjct 3085 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAAGCATTTCCTAAAGGAGCTGATTTGAT 3144 Query 165278 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGAAG 165334 |||||| ||||| | || | || || | ||| || ||| | || ||||| | Sbjct 3145 TTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTTGGTAC 3204 Query 165335 TTTAGGTATACACAAAAAGAAAGAATATAAA 165365 |||||||| |||||| | ||||| |||| Sbjct 3205 ATTAGGTATTCACAAACAATCAGAATTTAAA 3235 >seq94045 Length=338 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || |||| |||||||||||| | |||||||| |||||||| || ||||||||||| | | Sbjct 307 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 248 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 || || || ||||||| |||||||| ||||| || Sbjct 247 CATATGTCCGGATATTGGATTGGGAATATAACGAA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668517369547480