Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6932 212 6e-50 seq6747 127 2e-24 seq4418 100 3e-16 >seq6932 Length=2340 Score = 212 bits (234), Expect = 6e-50 Identities = 466/684 (68%), Gaps = 22/684 (3%) Strand=Plus/Plus Query 19411 GGGTTCGCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCGAAGAATTTC 19470 ||||| || || || || || || ||||||||||||||||| || ||||| ||||||||| Sbjct 947 GGGTTAGCACCTTTACCACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATTTC 1006 Query 19471 CACGTTTCTAGATACTCTTGGACCGAATCGATAAA-CGTCTGCCGTACGCTCTTGTCGTG 19529 || ||| ||| |||| | || || | | ||| ||| | | | | | ||||| Sbjct 1007 CATGTTAGAAGAAACTCCTTAACTGACTGCACAAATCGTGTTCTCTTAGAT-TTGTCAAC 1065 Query 19530 CATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATG 19589 | | | | || || || | || ||||| || || || || || || | || | | Sbjct 1066 TAAAAAGAAGAAAGGATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTC 1125 Query 19590 AGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCA 19649 |||| || ||| || ||| | ||||||||||||||||||||| || |||||||| Sbjct 1126 AGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCA 1185 Query 19650 TGCGCTGACA--CCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACT 19707 || |||| |||||||| ||||| |||| || ||||| |||||||| || | ||| Sbjct 1186 --CGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACT 1243 Query 19708 TTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTT 19767 |||||||| |||| ||| ||| || || |||| |||| ||||||||| || | Sbjct 1244 TTGAAGTCCTCACGGCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCGATCTCT 1303 Query 19768 TTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATGC 19827 || | | ||||| ||||| || || ||||| || || | || || || | |||||| Sbjct 1304 TTTAAGCTGTCATTTATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATGA 1363 Query 19828 GACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTCG 19887 | | || ||| | || | ||| ||||| || | || ||||| ||||||||||| Sbjct 1364 GTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTTCTAGGATAGACACCCCATTCT 1423 Query 19888 ACAAAGTATGCACCTATGATCTTGTCCGAGCGCTTT--TCGAACCGTTTATTGTTTTCGA 19945 || ||||| || |||| | ||| ||| || ||| | || | ||||| ||||| Sbjct 1424 ACGAAGTAGGCGCCTA-CAACTTTTCC-AGATGTTTGCTTAAATGGCTTATTTTTTTC-T 1480 Query 19946 GATAATCGTAGA--CGAGCGGTTCGAGATGCGATCCGTCCGTGTCGGCTACGACAACTTT 20003 ||| ||| | | || || | ||| ||| || || || || ||||||| || Sbjct 1481 CCCAAT-GTATATTCCAGAGGCGGTAAATGACTTCCATCAGTATCAGCCACGACAATTT- 1538 Query 20004 AACCGGTGCGCTAG-TCGAA---CAGCCGTCGACGTTGCACAGTTTCACAGTCATATCGT 20059 ||||| | | | | ||| |||||||| | ||||| |||| ||| ||||| | || Sbjct 1539 ---CGGTGGGATCGCTGGAACTGCAGCCGTCTTCATTGCAAAGTTCCACTGTCATTTGGT 1595 Query 20060 ACTTGCCGCCCTTAGTAACGGGAA 20083 | | || || || | |||||||| Sbjct 1596 ATCTTCCACCTTTCGAAACGGGAA 1619 >seq6747 Length=1699 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| |||||||||||||| |||||||| ||| Sbjct 1323 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAA 1382 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| | ||| || ||||| |||| ||||| |||||||| || || Sbjct 1383 AGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGG 1442 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| |||||||| ||||| ||||| | ||| | || || | |||||| ||| Sbjct 1443 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1502 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || || | ||||| || || || |||||| Sbjct 1503 TCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCATA 1550 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| |||||||| | |||||||| ||||| ||||| ||||| Sbjct 1095 CCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCAGAT 1154 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| |||||||| |||||| | || || | ||| || || || || Sbjct 1155 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGA 1214 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || ||| || | | ||| | ||||||| |||||||| Sbjct 1215 ATACCTTCTTTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGTTCTACC 1274 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | || || || || || ||||| Sbjct 1275 TCTAAGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1321 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||| | |||||||| | |||||||||||||| |||||||| || Sbjct 1551 CCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAA 1610 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| | ||| || || || | || |||||||| ||||| ||||| Sbjct 1611 AGTGTACGACCATCTTCTAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGA 1670 Query 143078 ATGCCTTCTTTGTC 143091 |||||||||||||| Sbjct 1671 ATGCCTTCTTTGTC 1684 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | |||||||| | |||||||||||||| |||||||| || | Sbjct 411 CCACCGCGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGAC 470 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || | |||||||||||| |||| ||||| || || || || || Sbjct 471 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 530 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || || || || ||| || | | ||| | ||||| | || || || Sbjct 531 ATGCCCTCCTTATCTTGGATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACC 590 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || || || || | ||| || || || || |||||| || Sbjct 591 TCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACAAAGATCTGCATACCT 641 >seq4418 Length=3433 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||||||||||| || || |||||||| | ||| || ||||| ||||| Sbjct 1064 TGAAGGGTAGATTCTTTCTGAATATTGTAATCAGATAATGTTCTTCCATCTTCAAGTTGC 1005 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||| ||| | |||| | || || || || || |||||||||||||| ||||||| Sbjct 1004 TTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCCTGAATTTTT 945 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | ||| | || || | | ||||||||| | || | || ||||| ||| Sbjct 944 GCCTTGACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTC 885 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| ||||| |||||||| Sbjct 884 AGCGTTTTCACGAAAATTTGCAT 862 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || | || ||||| |||||| || | |||||||||||||| || || ||||| Sbjct 632 CCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGAT 573 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| | ||||| || || | ||||| | || || || ||||| Sbjct 572 AGAGTGCGTCCA-TCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGG 514 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||||||| || | | ||| | || || | | ||| || Sbjct 513 AATACCTTCCTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCAC 454 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | |||||||| |||| ||| ||||| || |||||||| Sbjct 453 TTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505033729233360