Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4418 134 1e-26 seq6747 114 9e-21 seq173230 84.2 2e-11 >seq4418 Length=3433 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | ||| | ||| | |||||||| || ||||| || || |||||||| | Sbjct 1088 CCACCTCTGAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGAATATTGTAATCAGAT 1029 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||| | ||| || || || | ||||| | |||||||| ||| Sbjct 1028 AATGTTCTTCCATCTTCAAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGGA 969 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||||| ||| ||| ||||||| ||||| | |||||| Sbjct 968 ATGCCTTCTTTGTCCTGAATTTTTGCCTTGACATTTTCTATTGTATCAGAAGCTTCTACT 909 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| || ||||| ||||| || ||||||||||| Sbjct 908 TCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCAT 862 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 |||||| || | || || |||||||| || || ||||| |||| | | | ||||| Sbjct 615 AACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGATAGAGTGCGTCCATCTTC 556 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || |||||||| ||| | |||| | |||||||| ||||| ||||| ||||| Sbjct 555 CAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTG 496 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| ||| ||||||| ||||| | ||| || || || || || || || Sbjct 495 AATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTCTT 436 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || ||||||||||||||||| Sbjct 435 GCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 Score = 98.7 bits (108), Expect = 7e-16 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | ||| || || ||| | ||||| | ||||||||| ||||| ||||| ||| Sbjct 332 TCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTG 273 Query 15269 TCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| ||||| ||| ||| |||| || || || ||| || ||||| ||||| Sbjct 272 TCTTGAATCTTTGC-CTTAACATTTTCGATTGTGTCAGATGCTTCCACTTCTAAAGTAAT 214 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| ||||| |||||||||||||| Sbjct 213 AGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 178 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| || || ||||| || | ||| || || ||||| || ||||| || Sbjct 860 CCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTGAC 801 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | |||||| || || | || | | |||||||| ||| Sbjct 800 AGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGA 741 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || |||||| ||| ||| |||| || ||||| | || || Sbjct 740 ATCCCCTCCTTATCTTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTCAACT 681 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||| || || ||||| || |||||||||||||||||||| Sbjct 680 TCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCAT 634 >seq6747 Length=1699 Score = 114 bits (126), Expect = 9e-21 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || |||||||| || || || || ||||| ||||| ||||| ||| | | | ||| Sbjct 1110 AATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCAGATAGTGTACGGCCATCT 1169 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| ||||| | || | | ||||||||| ||||| ||||||||||| Sbjct 1170 TCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGAATACCTTCTTTGTCT 1229 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGG 15329 || ||||| ||| || |||| || || || | || |||||| |||||||| |||| Sbjct 1230 TGGATCTTTGC-CTTCACGTTTTCAATAGTGTC-CGATGGTTCTACCTCTAAGGTGATGG 1287 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| ||||| ||||| || ||||| || ||||| Sbjct 1288 TTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1321 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| ||||| || || |||||||| | | | | | ||||| Sbjct 885 ACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGACAAAGTGCGACCATCTTCC 944 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || ||||| | || | ||| || || || ||| || || |||||||| Sbjct 945 AATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGG 1004 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||||||| |||| || || || ||| || ||||| ||||| ||||| Sbjct 1005 ATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAACGTAATTGTTTTT 1064 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| ||||||||||||||| Sbjct 1065 CCAGTAAGTGTTTTAACAAAAATTTGCATA 1094 >seq173230 Length=587 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/117 (78%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 15254 GGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTC 15312 ||||| ||||| ||||| |||||| ||| |||||| |||| || || ||| | ||| Sbjct 1 GGAATGCCTTCCTTGTCTTGAATTTTCGCT-TTTACATTTTCAATAGTGTCGGAAGGTTC 59 Query 15313 TACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || || || |||||||||||||| || || ||||| || ||||| ||||| ||||| Sbjct 60 AACTTCCAAAGTAATGGTTTTACCAGTGAGTGTTTTCACGAAAATCTGCAT-TTTGA 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360799705039143