Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6932 183 3e-41 seq47026 107 2e-18 seq4418 105 6e-18 seq6747 89.7 4e-13 >seq6932 Length=2340 Score = 183 bits (202), Expect = 3e-41 Identities = 592/908 (65%), Gaps = 27/908 (3%) Strand=Plus/Plus Query 100328 TAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA- 100386 ||||| || || ||||||| |||||| || | || || || | ||| |||||||||| Sbjct 482 TAATCAACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAG 541 Query 100387 --ATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACG 100444 | |||||| ||| || | ||||| |||||||| || || ||||||||||| Sbjct 542 GGAATGTTGTCTTCGTAAT---CATGAACGCCAGTCCAACCACGACCATACATGGCAACA 598 Query 100445 CCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAGCAATTTCACGGCGTGATCC 100504 || || | ||| || || | ||| ||||| | | |||| || || || Sbjct 599 CCTACTACAATCTTCTTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTCCGAAGTCA 658 Query 100505 GTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAA- 100563 | |||| || || || |||| |||||||| | | ||||| | | |||| Sbjct 659 GATGTGTAAGTTTCCTTGGGACTCCATGCAGGCGCGTACAATGGTGTTTGAT-GTCCAAG 717 Query 100564 ---ATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCAT-AAGAAATATTTTATCGA 100619 ||| ||||||||||| || || || || || ||||| |||||| || | ||| | Sbjct 718 AGTATCA---TTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAA-ATATGATCCA 773 Query 100620 GAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGATTG 100679 | ||||| || | |||| | || || ||||| || | || || || || | Sbjct 774 TATAATTTTGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAG 833 Query 100680 CGCTTGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGT-AGCTGGTCCAGCATCGCGCGC 100738 | || || ||||| | || || | | || || |||| || |||||| | || Sbjct 834 CAGAAGTTAATTCGTATTTCTTACCATTCTT-AGCTGAGAGCTCATCGAGCATCTCACGT 892 Query 100739 AATTCCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGTCGGG 100798 ||||| |||| ||| | || || | || || | | || ||| ||| Sbjct 893 AATTCTTTCATCAAACTTACATAACAATCACCATCT---TCTGGGCTACCGAGATCAGGG 949 Query 100799 TTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTTCCAC 100858 || || ||||| || || || |||||||| || || || || || ||||| || ||||| Sbjct 950 TTAGCACCTTTACCACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATTTCCAT 1009 Query 100859 ACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGTGCATG 100918 | | ||| ||||| || || | |||||| || | | | | | || | Sbjct 1010 GTTAGAAGAAACTCCTTAACTGACTGCACAAAT---CGTGTTCTCTTAGATTTGTCAACT 1066 Query 100919 AAATAGAAC---GGGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGTGC 100975 ||| |||| || |||| | |||||| || || || || || ||||| || | | Sbjct 1067 AAAAAGAAGAAAGGATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCA 1126 Query 100976 GGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTTCCAT 101035 || ||| | || | ||||| || || || ||||| ||||| ||||||||||| Sbjct 1127 GGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCAC 1186 Query 101036 GCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGACTTTG 101095 | |||| || ||||| |||||||||| ||| ||||| |||||||| || | ||||||| Sbjct 1187 GAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTG 1246 Query 101096 AAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTTTTG 101155 || || ||| || | ||||| |||||||| |||| |||||||| || ||| Sbjct 1247 AAGTCCTCACGGCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTT 1306 Query 101156 AGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATGCGAG 101215 | | ||| || | ||| || ||||||||||| || || || || || | || ||| | Sbjct 1307 AAGCTGTCATTTATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATGAGTA 1366 Query 101216 AGATTGGG 101223 ||||| || Sbjct 1367 AGATTAGG 1374 >seq47026 Length=2159 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289 |||| || ||||| || |||||||| |||| || || || || ||||||||||| Sbjct 2092 CGCAGGAAGGGGCACTGGGGCGCCCACCTTTGGTGGTCCTTGGCGGGATCGTCGCCCGCA 2033 Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349 |||| |||||| || ||||| |||||||||||||| ||||| |||||||| |||| | Sbjct 2032 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGG 1973 Query 25350 TAGTAGAACCCATT 25363 || ||||| || || Sbjct 1972 TAATAGAAGCCGTT 1959 >seq4418 Length=3433 Score = 105 bits (116), Expect = 6e-18 Identities = 164/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || | || || | |||||| ||||| ||||||||||||||||| || | Sbjct 862 TTCCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTG 803 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 || ||| |||||| || || ||||| || ||| ||||||| ||||| || || Sbjct 802 ACAGTGT----GCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCT 747 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | ||||| || || |||||| || || | | | ||||| |||| Sbjct 746 GGGGGAATCCCCTCCTTATCTTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGC 687 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||| | ||||| || || ||||| | ||||| ||||||||||||||| Sbjct 686 TCAACTTCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCATT 633 >seq6747 Length=1699 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||| || |||||||| ||||| || | | || | |||| Sbjct 1338 AATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCT 1397 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| || || || || | ||||| | ||||||||| || | |||||||||||| Sbjct 1398 TCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCTTTGTCT 1457 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||| |||||| | | | |||||| || ||| ||| | |||||||| Sbjct 1458 TGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAATGGTC 1517 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||| ||||| |||||||| ||||| Sbjct 1518 TTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 |||||||||| | | |||| ||| | || ||||| || |||||||||||||| | | Sbjct 867 CCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGAC 926 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | || |||| || ||||| ||| | ||||| | ||||||||| || Sbjct 927 AAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 986 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC-TCCGT 18993 | |||||||||||| ||||| ||||| | | | || || |||| || Sbjct 987 ATGCCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTC-AGAGGCTTCAAC 1045 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||||| ||||| || || | ||||| |||||||||||||| Sbjct 1046 TTCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412993744415062