Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq6747 118 7e-22 seq4418 87.8 1e-12 >seq6747 Length=1699 Score = 118 bits (130), Expect = 7e-22 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || |||||||| || ||||||||||| |||||| || | || ||| Sbjct 885 ACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGACAAAGTGCGACCATCTTCC 944 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 |||||||| ||| ||| || | ||| ||||| || | || ||||| ||||| || | Sbjct 945 AATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGG 1004 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| ||||| ||| ||| ||||| || || ||| || | || || ||| Sbjct 1005 ATTTTAGCC---TTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAACGTAATTGTT 1061 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| ||||| ||||| || ||||||||||| Sbjct 1062 TTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 105 bits (116), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || || |||||||| || ||||| || || | | || | | Sbjct 1335 CGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCG 1394 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || ||||||||||||||| || || | ||| ||||| || | || ||||| ||||| Sbjct 1395 TCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCTTTG 1454 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || |||||| ||| ||| || || ||||| || |||||||| Sbjct 1455 TCTTGGATTTTAGC---TTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTA 1511 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || ||||| || ||||| ||||| Sbjct 1512 ATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 >seq4418 Length=3433 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||||| ||||| ||||| || || || ||||| || || |||| || || Sbjct 392 CGCAGCACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGTCTGACAGTGTGCGTCCA 333 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||||||| || || || | ||| ||||| | || |||||||| || Sbjct 332 TCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTG 273 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| |||| | || ||| || ||||| | || || || | ||| Sbjct 272 TCTTGAATCTTTGCCT---TAACATTTTCGATTGTGTCAGATGCTTCCACTTCTAAAGTA 216 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || ||||| || ||||||||||| Sbjct 215 ATAGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317563416267654