Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq6932 248 7e-61 seq6747 105 6e-18 seq4418 98.7 8e-16 >seq6932 Length=2340 Score = 248 bits (274), Expect = 7e-61 Identities = 640/966 (66%), Gaps = 23/966 (2%) Strand=Plus/Plus Query 101018 TAATCGACAACGCCGTCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA- 101076 ||||| || || ||||||| ||||||||| | || || || | ||| |||||||||| Sbjct 482 TAATCAACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAG 541 Query 101077 --ATAGTTGTCACCGTCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACG 101134 | |||||| ||| || | || ||||| |||||||| || || ||||||||||| Sbjct 542 GGAATGTTGTCTTCGTAAT--CATGA-ACGCCAGTCCAACCACGACCATACATGGCAACA 598 Query 101135 CCCACAATAATTTTGCGCGGGTCTACGCCCTGGTTCGTGAGCGATTTAACAGCGTAATCC 101194 || || | ||| || || | || ||||| | | |||| || || | || Sbjct 599 CCTACTACAATCTTCTTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTCCGAAGTCA 658 Query 101195 GTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGA 101254 | |||| || || || |||| |||||||| | || ||||||| || ||| Sbjct 659 GATGTGTAAGTTTCCTTGGGACTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGA 718 Query 101255 TCGATGTTTGACCACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAGGAAC 101314 |||||||| || || ||||| || || ||||| | || || | ||| | | Sbjct 719 GTATCATTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAA 778 Query 101315 TTTTGCGCAAGATCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGCACTT 101374 ||||| || |||| | || || ||||| || || || ||||| ||| Sbjct 779 TTTTGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAA 838 Query 101375 GTTAATTCGTATGTTTTGCCCGTTTGCAGTTGCAA-CTCGTCCAGCATTGCGCGCAATTC 101433 |||||||||||| | || || | | || || | ||| || ||||| | || ||||| Sbjct 839 GTTAATTCGTATTTCTTACCATTCTT-AGCTGAGAGCTCATCGAGCATCTCACGTAATTC 897 Query 101434 TTTCAGTAAAATGTTGTACGTGTCAGCGTCGCGTTCTTTGTTGCCGAGTGTTGGGTTGGC 101493 ||||| ||| | || ||| | || |||| | | ||||| ||||| || Sbjct 898 TTTCATCAAACTTACATAACAATCACCATC---TTCTGGGCTACCGAGATCAGGGTTAGC 954 Query 101494 GCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAACCTG 101553 ||||||||||| || |||||||||||||| || || || ||||| |||||||| | Sbjct 955 ACCTTTACCACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATTTCCATGTTAG 1014 Query 101554 CAAAAATTCTTTGACAGAATCCACAAACACACGCCGTTTTATC---GCGTCGTGCA-TAT 101609 | ||| || || || || | |||||| ||| || || | | || | || Sbjct 1015 AAGAAACTCCTTAACTGACTGCACAAAT------CGTGTTCTCTTAGATTTGTCAACTAA 1068 Query 101610 AAT--AGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTGTGG 101667 || |||| || |||| | ||||| || || || || || | ||| || | | || Sbjct 1069 AAAGAAGAAAGGATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGG 1128 Query 101668 ATTGGCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGC 101727 ||| ||| | ||||| || ||||||||||||||||||||||||||||| | Sbjct 1129 GCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCACGA 1188 Query 101728 AGATACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCAACTTTAAA 101787 ||| | ||||| || |||||||||| ||| ||||| ||||||||||| | ||||| || Sbjct 1189 AGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAA 1248 Query 101788 ATCTGAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATGGTTTTGAG 101847 || |||||| || || || |||| |||| ||||| || || ||| | Sbjct 1249 GTCCTCACGGCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAA 1308 Query 101848 GGCGTCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGTACAACAAATGTGAGAG 101907 | ||| || | |||||| ||||| ||||| || || || || || | |||||| | || Sbjct 1309 GCTGTCATTTATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATGAGTAAG 1368 Query 101908 GTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACACGCCCCATTCTACAAA 101967 || || | || | ||||| || || || | | ||| || ||||||||||| || Sbjct 1369 ATTAGGTATAGGTATACGATCCACGGGGAATTTTCTAGGATAGACACCCCATTCTACGAA 1428 Query 101968 ATACGC 101973 || || Sbjct 1429 GTAGGC 1434 >seq6747 Length=1699 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | | ||| ||||| || || |||||||||||||| |||||||| ||| Sbjct 1321 TTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGG 1380 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACG 20098 | ||| ||||||||||| || || || | ||||| | ||| ||||| | || Sbjct 1381 AAAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCG 1440 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | ||| |||||||| ||||| ||| || | ||| || ||| |||||| Sbjct 1441 GG-ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCC 1499 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| |||||||| || || || | ||||| |||||||| ||||| Sbjct 1500 ACTTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--A 20053 ||| || |||||||| |||||||| ||||| ||||| ||||| ||||| | | | Sbjct 1109 CAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCAG--ATAGTGTACGGCCA 1166 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 ||||||| |||||| || ||| |||| ||||| ||||| || ||| | ||||||||| Sbjct 1167 TCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGAATACCTTCTTTG 1226 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || || ||| ||||| | ||| || || ||||| || | ||| ||| Sbjct 1227 TCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGTTCTACCTCTAAGGTGATG 1286 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| || || | || || ||||| || |||||| Sbjct 1287 GTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 1322 >seq4418 Length=3433 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||||||||| || || |||||||| | ||| | |||||| | ||| Sbjct 1064 TGAAGGGTAGATTCTTTCTGAATATTGTAATCAGATAATGTTCTTCCATCTTCAAGTTGC 1005 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| | |||||||| || ||| | |||||||||||| ||||||| Sbjct 1004 TTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCCTGAATTTTT 945 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | | | ||| || ||| ||||| || || |||||||| ||| Sbjct 944 GCCTTGACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTC 885 Query 20186 AACGTTTTGACAAAAATTTGCATT 20209 | |||||| || |||||||||||| Sbjct 884 AGCGTTTTCACGAAAATTTGCATT 861 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20012 GTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCC 20071 |||||||||||||| || || ||||| | ||| ||||||||| |||||||| Sbjct 602 GTAGATTCTTTTTGAATATTATAATCAGATAGAGTGCGTCCATCTTCCAACTGTTTGCCG 543 Query 20072 GCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 20131 || |||| || |||||||| || || | ||||| ||||| ||||||| || Sbjct 542 GCGAAAATCAGTCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTTGCCTTA 483 Query 20132 ACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTT 20191 || | | | | ||| || |||| ||||| || || || ||||| |||| || Sbjct 482 ACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGATAGTCTTGCCAGTCAGTGTC 423 Query 20192 TTGACAAAAATTTGCATT 20209 || ||||||||||||||| Sbjct 422 TTTACAAAAATTTGCATT 405 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20012 GTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCC 20071 |||||||| ||||| || ||||| || || || |||||| | |||||| || Sbjct 830 GTAGATTCCTTTTGAATATTGTAGTCTGACAGTGTGCGTCCATCTTCAAGTTGTTTTCCT 771 Query 20072 GCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 20131 ||| |||||||||||||||| || ||| | || || || || ||||||| || Sbjct 770 GCAAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCTTGAATTTTTGCCTTA 711 Query 20132 ACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTT 20191 || | ||| | ||| ||| || ||| | ||||| || ||||| || | ||| Sbjct 710 ACATTTTCAATTGTATCAGAAGGCTCAACTTCAAGAGTAATAGTCTTGCCTGTAAGTGTT 651 Query 20192 TTGACAAAAATTTGCATT 20209 || ||||||||||||||| Sbjct 650 TTTACAAAAATTTGCATT 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417989045196963