Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4418 201 3e-46 seq6747 178 3e-39 seq94046 113 1e-19 seq211979 100 7e-16 seq173230 98.7 2e-15 >seq4418 Length=3433 Score = 201 bits (222), Expect = 3e-46 Identities = 183/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | ||||||| || || |||||||| || |||||||| ||||| Sbjct 863 ATTCCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCT 804 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| ||||||||||| |||||||| ||||||||||| || || Sbjct 803 GACAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGG 744 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || ||||| ||||| ||||| || |||||||| | ||||| ||| || Sbjct 743 GGAATCCCCTCCTTATCTTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTCA 684 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || ||||||||||| || ||||||||||||||||| || |||||| Sbjct 683 ACTTCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCATT 633 Score = 192 bits (212), Expect = 1e-43 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || ||||| | || |||| || || ||||||||||| ||||||||||| ||| Sbjct 635 ATTCCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCA 576 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||||||| | || ||||| | ||||| || || ||||| || |||||||| || ||| Sbjct 575 GATAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGA 516 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| ||||| || |||||||||| ||||| || ||| Sbjct 515 GGAATACCTTCCTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCC 456 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | ||| |||||||| ||||| ||||| |||||||| || |||||| Sbjct 455 ACTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 405 Score = 187 bits (206), Expect = 6e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || || || || || | |||||||||||||||||||| || |||||| Sbjct 1088 CCACCTCTGAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGAATATTGTAATCAGAT 1029 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||| || ||||| ||||| || || |||||||| | |||||||| || || || Sbjct 1028 AATGTTCTTCCATCTTCAAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGGA 969 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| |||||||| ||||| || |||||||||| ||||| || |||||| Sbjct 968 ATGCCTTCTTTGTCCTGAATTTTTGCCTTGACATTTTCTATTGTATCAGAAGCTTCTACT 909 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || | ||| ||||| || ||||| || ||||| || || || |||||| Sbjct 908 TCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCATT 861 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | || || | || || || ||||| ||||||||||||||||| Sbjct 407 ATTCCACCCCTAAGACGCAGCACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGTCT 348 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| ||||| ||||| || ||||| | || ||||| || ||| Sbjct 347 GACAGTGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGGA 288 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||||||||| || |||||||| | || || | ||| Sbjct 287 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGATGCTTCC 228 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| |||||||| || ||||| |||||||| ||||| || ||||| Sbjct 227 ACTTCTAAAGTAATAGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 178 Score = 145 bits (160), Expect = 2e-29 Identities = 134/170 (79%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||||| | || || || ||||| ||||||||||| |||||| Sbjct 179 ATCCCACCTCTCAGACGCAGTACCAAGTGCAAAGTCGATTCCTTCTGAATATTGTAGTCA 120 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| || | || ||||| || || |||||||||||||||||||| || ||||| || Sbjct 119 GATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATTAGCCTTTGCTGATCTGGG 60 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 || || || |||||||||||||| || || || |||||||| | ||||| Sbjct 59 GGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATC 10 >seq6747 Length=1699 Score = 178 bits (196), Expect = 3e-39 Identities = 166/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| ||||| |||||||| || ||||| ||||| |||||||| || | || ||||| Sbjct 1112 TACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCAGATAGTGTACGGCCATCTTC 1171 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 |||||||||||||||||||| ||||| ||||| || || || || |||||||| || || Sbjct 1172 CAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGAATACCTTCTTTGTCTTG 1231 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||||||| || || ||||| | || || ||||||||||||| || || || || Sbjct 1232 GATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGTTCTACCTCTAAGGTGATGGTTTT 1291 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || ||||| ||||||||| Sbjct 1292 TCCTGTAAGAGTCTTAACAAAGATCTGCATT 1322 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| | | ||| | || || || || |||||||||||||| |||||| Sbjct 636 ATACCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCA 695 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| || || || || || |||||||||||||| | |||||||| || Sbjct 696 GAGAGAGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGG 755 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || || || ||||| ||||| |||||||| | || || ||||| Sbjct 756 GGAATACCCTCCTTGTCTTGTATCTTGGCTTTAACATTTTCAATAGTGTCTGATGGTTCC 815 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| ||| ||||| || || || ||||| |||||||| |||||||| Sbjct 816 ACTTCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || ||||| || ||||| | |||||||| | ||| |||||| Sbjct 1353 GTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCTTCCAATTGCTTTCCA 1412 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| |||||||| || || || ||||| || || || || |||||| Sbjct 1413 GCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTT 1472 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| ||||| || || || ||||| ||||| ||||| || ||| Sbjct 1473 ACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAATGGTCTTTCCAGTTAGGGTT 1532 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 1533 TTAACAAAAATCTGCAT 1549 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | |||||||| ||| || ||||||||||| || || || ||||| Sbjct 408 ATTCCACCGCGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCC 467 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || || | ||||| |||||||| || || | |||||| || || Sbjct 468 GACAGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGG 527 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || ||||| || |||||||| || |||||||| | || ||| || || Sbjct 528 GGAATGCCCTCCTTATCTTGGATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCC 587 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || ||||| || ||||||||||| || ||||| |||||||| Sbjct 588 ACCTCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 637 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||||| | || | || || |||||||||||||| || || Sbjct 864 ATACCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCT 923 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | ||| ||||| | ||| || |||||||| || || | ||| |||||||| Sbjct 924 GACAAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGT 983 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| || || || || || ||||||||||| | || || | ||| Sbjct 984 GGGATGCCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCA 1043 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| ||||| || || |||||||||||||| ||||| || ||||| Sbjct 1044 ACTTCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 116 bits (128), Expect = 8e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| | |||||||| ||| || ||||||||||| || || || |||||| Sbjct 1548 ATACCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCA 1607 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||||| ||| || || || ||||| || | |||||||| ||| Sbjct 1608 GAAAGTGTACGACCATCTTCTAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGA 1667 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 || || |||||||| || || || || || || Sbjct 1668 GGAATGCCTTCTTTGTCTTGGATTTTAGCCTT 1699 >seq94046 Length=398 Score = 113 bits (124), Expect = 1e-19 Identities = 124/164 (76%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 268855 TCTT-GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 |||| || || ||||| | | ||||||||| ||||| || || | || ||| |||| Sbjct 310 TCTTAGCCTTCTTTGCGGCTTCTGATGGTATTGTTAATGAGAACTTGGTGGAGCGTTTCT 251 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 |||||||| || | |||||||||| || || || || || || || ||||| |||| Sbjct 250 CACAAGAGGTTCAAGTGACTGAAGCCAGGTGCTTCTATGGTTTTCAAATTGCTATGGAAA 191 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATA 269017 || ||||||||||||||||| | ||||||| || || |||||| Sbjct 190 ATGTTCATTCAGAGATGTACTCTTTATTAATTGACACATATATA 147 >seq211979 Length=1174 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 237987 CAAGTTGACGCTCACAATATTGTACCTTGTTGGGAAGCATCTCATAAACAAGAATACGGT 238046 || || || ||||||||| | || || ||||||| || ||| ||||||| ||||| Sbjct 1060 CAGGTAGATGCTCACAATGTGGTGCCATGTTGGGTGGCTTCTGATAAACAGGAATATTCA 1001 Query 238047 GCTAGAACATTACGTAAGAAAATAAATGGTATGTTAGATACATATCTTACAGAATTTCCT 238106 || |||||| | | || ||||| ||| || ||||||| |||||| |||||||||||| Sbjct 1000 GCGAGAACAATTAGAAATAAAATCAATTCTAAGTTAGATGAATATCTCACAGAATTTCCT 941 Query 238107 GTAATAACTAAACATCCTTA 238126 | | | |||||||||||| Sbjct 940 CCAGTTATTAAACATCCTTA 921 >seq173230 Length=587 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || |||||||||||||| | || ||| |||||| Sbjct 1 GGAATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCGGAAGGTTCA 60 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || | ||||| || |||||||| |||||||| || || |||||||||||| Sbjct 61 ACTTCCAAAGTAATGGTTTTACCAGTGAGTGTTTTCACGAAAATCTGCATTTTG 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146787969447284