Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6932 185 7e-42 >seq6932 Length=2340 Score = 185 bits (204), Expect = 7e-42 Identities = 631/968 (65%), Gaps = 29/968 (3%) Strand=Plus/Minus Query 30232 TACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGA-CTTAGTTCCCGTCCC 30290 ||||| ||||| |||||||| || ||| ||| || | || | || | || | || Sbjct 1431 TACTTCGTAGAATGGGGTGTCTATCCTAGAAAATTCCCCGTGGATCGTA-TACCTATACC 1373 Query 30291 CAACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGA 30350 || ||||| ||| | | ||||||||| | || | ||||| || ||||| ||||| || Sbjct 1372 TAATCTTACTCATTTGCTCTATGGCTTTATTCCAATTTGCGGCGGTGATGGCATAAATGA 1313 Query 30351 TAGCTTAAAGCAAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAGA 30410 |||||||| | | || || | || | || || || || || || Sbjct 1312 CAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAGCGGTCCTGTAGCGGCCGTGA 1253 Query 30411 GGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAGT 30470 ||| || ||||| | || |||||| |||| || | |||||||||||||||||| | Sbjct 1252 GGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATT 1193 Query 30471 GGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGACA 30530 | | ||| |||| || || ||||| || ||||||||| | ||| | | |||| | Sbjct 1192 GTCTTCGTGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTC-ACTAAA----A 1138 Query 30531 CAATCCCGACC-----TTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCT 30585 ||| |||| || | | |||| | || |||||||| |||||||| || ||| ||| Sbjct 1137 CAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTCGCCGATCCT 1078 Query 30586 TTCTTTAAATTGAGTTCTGCCGAA---AATCGCGC-CGTTTTCGTTGAGTCCGCACGAGA 30641 ||| || || ||| || | || || | | || ||| || |||| | || Sbjct 1077 TTC-TTCTTTTTAGT--TGACAAATCTAAGAGAACACGATTT-GTGCAGTCAGTTAAGGA 1022 Query 30642 GTATTTGCGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGG 30701 || | | | ||||||||||| ||||| || | || ||||| |||||||| || || || Sbjct 1021 GTTTCTTCTAACATGGAAATTCTTTGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGG 962 Query 30702 TAAAGGTGCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACATATGTGCAGTT 30761 |||||||||||| || || | || |||||| ||||| | ||||| || Sbjct 961 TAAAGGTGCTAACCCTGATCTCGGTAGCCCAGAA---GATGGTGATTGTTATGTAAGTTT 905 Query 30762 ATTGAAAGAGCTCAGAGAAATGCTAAACGATCTTTC--TAAAGAAACAGGGAAAAAATAC 30819 ||||||| | | || ||||| | || || || ||||| || || |||||| Sbjct 904 GATGAAAGAATTACGTGAGATGCTCGATGAGCTCTCAGCTAAGAA--TGGTAAGAAATAC 847 Query 30820 CAGCTCACCTCGGCGATTAGCGCGGGGTACGATAAAATCTCTATAGTTAATTATGAAAAT 30879 | | || || || |||||| | || | ||||||||| | ||| | || | || Sbjct 846 GAATTAACTTCTGCTATTAGCTCTGGATGGGATAAAATCCAAGTTGTTGACTACGGCAAG 787 Query 30880 GCGCAAGAGTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCT 30939 || ||| | ||| | ||||| ||||| | |||| || || || || || || ||||| Sbjct 786 GCTCAAAATTATATGGATCATATTTTCTTGATGAGTTATGACTTCAAGGGAGCCTGGTC- 728 Query 30940 AACACGGACT-TGGGATATCACACTACACTTTATTCACCCTCTTGGAACGCTGAAGAAAA 30998 || ||| | ||| |||| || || | || | || | |||| | | |||| Sbjct 727 AAATGATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGAGTCCCAAGGAAAC 668 Query 30999 ATATACTGCCGAGTACGCGACAAAGGAGTTGTTAAAACAAAACGTCAATAGTAAGAAAAT 31058 || || | || | || ||| | ||||| ||| || ||| |||||| || Sbjct 667 TTACACATCTGACTTCGGAGTAAAATACTTGTTGGCACAGGGAGTGAATCCTAAGAAGAT 608 Query 31059 AGTGCTAGCTGTTGCAATGTACGGAAGAGGGTGGACGGGTGTGCATGACATAAAAAACAA 31118 || ||| |||||| ||||| || | || ||||| || || ||||| || |||| Sbjct 607 TGTAGTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGCGTTCATGATTACGAAGACAA 548 Query 31119 CAATCCCTTTACGGGTGTAGCTCAGGGGCCGATTAAAGGAACTTGGGAAAGTGGAGTTGT 31178 || |||||| || || ||| || || | ||||| |||||| || ||||| || Sbjct 547 CATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGTACTTGGCAAGACGGAGTGGT 488 Query 31179 AGATTACA 31186 ||||||| Sbjct 487 TGATTACA 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419646707230523