Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6747 156 4e-33 seq4418 143 2e-29 seq115306 96.9 3e-15 >seq6747 Length=1699 Score = 156 bits (172), Expect = 4e-33 Identities = 166/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| || || || | ||||||||||||||| | ||||||||| ||||||| | Sbjct 1107 CGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCAG--ATAGTGTACGGC 1164 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| ||||| |||||||| |||| || | ||||| || ||||| ||||||||||||| Sbjct 1165 CATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGAATACCTTCTT 1224 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || |||||||| ||| | | |||||| | | || || || | |||| Sbjct 1225 TGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGTTCTACCTCTAAGGTGA 1284 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||| |||||||| || |||||||||||||| Sbjct 1285 TGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1321 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 || || |||||||||||||| ||||| | ||| || || || |||| | ||||||| Sbjct 429 ACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCC 488 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||| || ||||||| | | || || ||||| ||||| || || || || | Sbjct 489 AACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGG 548 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||| || ||| |||||| | | || || || | ||||| ||||| Sbjct 549 ATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATAGTTTTC 608 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || || |||||||||||||| Sbjct 609 CCAGTAAGTGTCTTAACAAAGATCTGCAT 637 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || || |||||||||||||| || || || || | || || || Sbjct 639 CCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAG-- 696 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || |||||||||||| || || |||| |||| | ||| |||||||| | Sbjct 697 AGAGAGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGGG 756 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 ||||||| || ||||| | || || || || || | | |||||| | | || | Sbjct 757 GAATACCCTCCTTGTCTTGTATCTTGGCTTTAACATTTTCAATAGTGTCTGATGGTTCCA 816 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||| ||||| || || || || || |||||||||||||| Sbjct 817 CTTCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| || || | |||||||| | || || || || || | || ||||| | Sbjct 867 CCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGAC 926 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||| |||| || || || ||||||| | | |||||||| || || Sbjct 927 AAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 986 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | ||||| ||||| || | | ||||||| | || || Sbjct 987 ATGCCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACT 1046 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||| || |||||||||||||| ||||| ||||| || ||||| Sbjct 1047 TCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 >seq4418 Length=3433 Score = 143 bits (158), Expect = 2e-29 Identities = 178/242 (74%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || || | |||| ||||||||||||||| |||||||| || | Sbjct 417 AAAAATTTGCATTCCACCCCTAAGACGCAGCACCAAGTGCAAAGTCGATTCCTTCTGAAT 358 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||||| || | | ||||| | ||| ||||| || |||||| | || || |||||| Sbjct 357 ATTATAGTC--TGACAGTGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAATCTT 300 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || ||||||||||| ||||| ||||| | ||| |||||||| || ||| ||| Sbjct 299 TGTTGGTCTGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCGATTGTG 240 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | || || ||||| ||||| || ||||| ||||| || ||| Sbjct 239 TCAGATGCTTCCACTTCTAAAGTAATAGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGC 180 Query 95006 AT 95007 || Sbjct 179 AT 178 Score = 129 bits (142), Expect = 5e-25 Identities = 176/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 94762 TTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTT 94821 |||| |||| ||| || ||| || || | |||| || ||||||||||||||||| || Sbjct 651 TTTTACAAAAATTTGCATTCCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTT 592 Query 94822 TTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAA 94881 ||| | |||||||| | |||| ||| |||| |||||| ||| | || || | Sbjct 591 TTGAATATTATAATCAGATAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAG 532 Query 94882 TCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGAC 94941 ||| || || ||||||||||||||||| ||||| | |||||||||||| || | | Sbjct 531 TCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTTGCCTTAACATTTTCTAT 472 Query 94942 AGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGAT 95001 || |||| || || || | ||||| || || ||||| || || || ||||| || Sbjct 471 TGTATCAGAAGCTTCCACTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAAT 412 Query 95002 CTGCAT 95007 ||||| Sbjct 411 TTGCAT 406 Score = 114 bits (126), Expect = 1e-20 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||| ||||||| ||| | || |||||||| |||||||||||||| | Sbjct 872 AAAATTTGCATTCCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATA 813 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | | ||||| | ||| || || |||||||| |||| || | || | Sbjct 812 TTGTAGTC--TGACAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCT 755 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | || ||||| ||||| || || || || | |||||||||||| || | | || | Sbjct 754 GTTGGTCTGGGGGAATCCCCTCCTTATCTTGAATTTTTGCCTTAACATTTTCAATTGTAT 695 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| | || || |||| || || || || || ||||| ||||| ||||| || |||| Sbjct 694 CAGAAGGCTCAACTTCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCA 635 Query 95007 T 95007 | Sbjct 634 T 634 Score = 111 bits (122), Expect = 1e-19 Identities = 126/167 (75%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||||| |||| |||||||||||||| |||||||| || | Sbjct 189 AAAAATTTGCATCCCACCTCTCAGACGCAGTACCAAGTGCAAAGTCGATTCCTTCTGAAT 130 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || || || ||||||| | ||| || ||||| ||||| |||| |||| ||| Sbjct 129 ATTGTAGTCAG--ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATTAGCCTT 72 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 ||||||||||| ||||| || ||||| || | |||||| ||||| || Sbjct 71 TGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAAC 25 Score = 107 bits (118), Expect = 2e-18 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||||||| || ||||| | || | || | ||| | |||||||| || || | || | Sbjct 1096 TTTACACACCACCTCTGAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGAATATTGT 1037 Query 94833 AATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGA 94891 |||| | | || | || | || || || || || ||| |||| || ||||| || || Sbjct 1036 AATCAGATAATGTTCTTCCA-TCTTCAAGTTGCTTACCGGCAAAAATCAATCTCTGTTGG 978 Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951 ||||| ||||| ||||||||||| | ||||||||||||||| | | || |||| Sbjct 977 TCTGGGGGAATGCCTTCTTTGTCCTGAATTTTTGCCTTGACATTTTCTATTGTATCAGAA 918 Query 94952 TGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||| ||||| ||||| || |||||||| || || ||||| Sbjct 917 GCTTCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCAT 862 >seq115306 Length=588 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942 || ||||| ||||||||||| || |||||||| | || || |||||||| ||| | Sbjct 181 CTCTGCTGGTCTGGAGGAATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTCTCGATA 122 Query 94943 GTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002 ||||| | | | ||||| |||| |||||||| || || || || |||||||| || ||| Sbjct 121 GTGTCCGAGGGCTCGACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAAATC 62 Query 95003 TGCATG 95008 |||||| Sbjct 61 TGCATG 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446539933616280