Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq48588 511 6e-140 seq289356 95.1 2e-14 seq111536 91.5 2e-13 seq94045 91.5 2e-13 >seq48588 Length=2845 Score = 511 bits (566), Expect = 6e-140 Identities = 1096/1620 (68%), Gaps = 41/1620 (3%) Strand=Plus/Plus Query 61977 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 62036 |||||| | ||||| | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 255 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 314 Query 62037 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 62096 |||||||| ||||||| ||| | |||| ||| ||||| || ||||||||| | Sbjct 315 TACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 374 Query 62097 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62156 || | || | || | ||| || || | |||||||||||| || || || ||||| || Sbjct 375 TAGTTAGGTTTAGCAACATGTATGTTGAAAGATTGACTTTGGTCTATAAACGCTCCTCTA 434 Query 62157 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 62215 || || ||||| | |||| ||| || ||| ||| ||||| | ||||| || || || Sbjct 435 TCAGCGGCCATCTGTATGGACGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 494 Query 62216 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATGGATCCACCATCTGCCATAATCCT 62272 ||| || |||| || | ||| | ||| || || |||||| | ||||| Sbjct 495 CTT-ATTTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 553 Query 62273 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 62332 ||| || || || |||| |||||| | | || ||| | | || ||||| | || Sbjct 554 ATTTTTCATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGTT 613 Query 62333 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62392 ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||||| Sbjct 614 CACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAATGGTTC 673 Query 62393 CACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62452 | || ||| | || || | |||||| ||||| || ||||| ||||||||||| | ||| Sbjct 674 AAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTTGGCATAGGTGCTATCAA 733 Query 62453 TAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAA 62510 || | ||| | | ||| ||||| || || || ||||| || |||| |||||| Sbjct 734 TAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTTCCAA 791 Query 62511 AGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGA 62569 || || | || || || ||||| | || || | || Sbjct 792 AGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTAGCTGGAC-T 850 Query 62570 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 62629 |||| |||||| ||||| ||||| || || |||| ||||||||| || |||||||| Sbjct 851 TCCTTGATATGTGCTGTATGCGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGC 910 Query 62630 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 62689 ||| |||||||| ||||| || || | | ||| || | ||||| | || || | Sbjct 911 ACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGTA 970 Query 62690 TGGATAAT-TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62748 || || | | | | | ||| | || || | || |||||||||||||||||||||| Sbjct 971 AGG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGATAGGTC 1029 Query 62749 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62808 || ||| |||| || ||| ||||| || | ||||||| | |||| ||| || | || Sbjct 1030 GGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTT 1089 Query 62809 TATTGAGATTT---CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 62865 | || | |||| | ||||| ||||| | || || | ||| ||||| ||||| Sbjct 1090 TGTTTAAATTTTGAGTCACAAT--CTTTG-TGATTTCTTTTAATTTTTTAAAATTAAATC 1146 Query 62866 GCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT 62925 || | |||||| |||| | || | || || || || || || || || |||| Sbjct 1147 TATTATTTTCAACAAACTTGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCAT 1206 Query 62926 TAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTA 62982 | || | | ||||| | | ||||||||||||||| ||||| || ||||| || | Sbjct 1207 ---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAA 1263 Query 62983 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAG 63042 ||||| |||||||||||| |||| || ||||||||||| | || |||| ||||||| Sbjct 1264 GATTTTTTTGATTACTCTTCCTGTTGCAAGCATCCTTATATAACATATATGGTGTACCAG 1323 Query 63043 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT 63102 | || | |||| ||||||||| | ||||| | || |||| | | | | ||| | Sbjct 1324 TCTCCACTTGAGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGA--CTTGTTTTAT 1381 Query 63103 ATCTCCTTTCTCT--TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63160 | | ||| ||| ||| ||| | ||| | | ||| || || ||||| || | Sbjct 1382 AAACCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCATAACAGTC 1441 Query 63161 GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CAC 63217 | | |||||||| |||| |||||||| | ||| ||| |||||||| || Sbjct 1442 AGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCT---TCATCCTTTTCTAC 1498 Query 63218 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 63277 || ||||||||| ||||| || ||||| | || ||| || ||||| | ||| ||| Sbjct 1499 TCTTTTCATAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTTGCTCTCATTTC 1558 Query 63278 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63337 || || ||||| ||||| || | ||| |||||| | | || || | |||||| || || Sbjct 1559 TTCCTTACCTGTGTTCTTCTTTAAATCTAGGAACTCAAATATGTCCGCATGCCAAGGCTC 1618 Query 63338 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63397 ||||| || || | | || || ||||||||||| || ||||||| ||||| || || Sbjct 1619 TAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGT 1678 Query 63398 GTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT 63457 || || || |||||||||||||| | | ||| ||||| | ||||| ||||| | || Sbjct 1679 ATTGTTGTACACTCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGTACCAGCTAT 1738 Query 63458 ATAGCTTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 63514 ||| || ||| | || || || || || |||||| || || || ||| Sbjct 1739 ATAAGACCCCTGGGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCGGCAGATTT 1795 Query 63515 AGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCAT 63574 ||| |||||||| ||| ||||||| || ||| | ||||| || || ||||| || |||| Sbjct 1796 AGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATACTATCGTCTTTCAT 1855 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 63755 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 ||| |||||||| || ||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 2253 CTTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 2312 Query 63815 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63865 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 2313 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2363 >seq289356 Length=614 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63966 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCC 64025 || || || || || |||| ||| |||| ||||||||||| || | |||||||||||| Sbjct 511 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 452 Query 64026 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64085 ||||| | |||||| ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 451 GGATGATCTGTAGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 392 Query 64086 GTTACTCCATTATATATTCC 64105 ||||| ||| |||||| || Sbjct 391 GTTACACCAGAATATATGCC 372 >seq111536 Length=3730 Score = 91.5 bits (100), Expect = 2e-13 Identities = 243/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 156556 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCGTT 156613 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 2907 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTAT 2964 Query 156614 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 156673 ||||||| |||| || |||||| | || | ||||| ||||| ||| | || ||||| Sbjct 2965 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 3024 Query 156674 TCATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 156733 ||||||||| || ||||| | ||| | | | ||||||||| | |||| Sbjct 3025 TCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 3084 Query 156734 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 156793 ||||| | || | ||||| || |||| ||||||||| |||| | | | | Sbjct 3085 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAAGCATTTCCTAAAGGAGCTGATTTGAT 3144 Query 156794 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTCCCGTTTGGAAG 156850 |||||| ||||| | || | || || | ||| || ||| | || ||||| | Sbjct 3145 TTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTTGGTAC 3204 Query 156851 TTTAGGAATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGA 156910 ||||| || |||||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 3205 ATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 3264 Query 156911 CTGTTTGTA 156919 || || || Sbjct 3265 TTGCTTATA 3273 >seq94045 Length=338 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 || |||| ||||||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 307 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 248 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 || ||||| ||||||||||||||| ||||| || Sbjct 247 CATATGTCCGGATATTGGATTGGGAATATAACGAA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620513633402680