Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6932 197 1e-45 seq48588 136 4e-27 seq6747 107 2e-18 seq115306 95.1 1e-14 >seq6932 Length=2340 Score = 197 bits (218), Expect = 1e-45 Identities = 342/494 (69%), Gaps = 10/494 (2%) Strand=Plus/Minus Query 23642 CGCCTACTTTGTCGAGTGGGGCGTATATCCCAGACAATTTCCCGTAGACAAAGTGCCCGT 23701 ||||||||| || || ||||| || ||||| ||| |||| ||||| || | || | Sbjct 1435 CGCCTACTTCGTAGAATGGGGTGTCTATCCTAGAAAATTCCCCGTGGATCGTATACCTAT 1376 Query 23702 GCCTAATTTGTCACATTTGCTCTACGGCTTCGTACCTATATGCGGCGGCGAGGGAATTAA 23761 |||||| | | ||||||||||| ||||| | || || |||||||| || || || || Sbjct 1375 ACCTAATCTTACTCATTTGCTCTATGGCTTTATTCCAATTTGCGGCGGTGATGGCATAAA 1316 Query 23762 CGACGCTCTCAAAACCGTGCCG-GGCAGTTTCGAGGCGCTGCAGCGTTCGTGCGCGGGCC 23820 ||| || |||| | | ||||||||| | || |||||||| || || |||| Sbjct 1315 TGACAG-CTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAGCGGTCCTGTAGCGGCC 1257 Query 23821 GCGCCGACTTCAAGGTATCCATCCACGATCCGTGGGCAGCTCTTCAGAAGCCGCAGAAGG 23880 | | |||||||| || || ||||||||||| |||||||| | || || || || || | Sbjct 1256 GTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAG 1197 Query 23881 GAGTGTCGGCGTGGAACGAGCCGTATCGTGGAAACTTTGGTCAGTTGATGGCAACGAAAC 23940 || |||| ||||||||||||| || || |||||||| || || ||| || |||| Sbjct 1196 GATTGTCTTCGTGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAAC 1137 Query 23941 TGGCGTATCCGCACTTGAAAGTGCTACCTTCGATCGGTGGCTGGACGCTGTCTGATCCGT 24000 || || | ||||| | || || || || ||||| |||||||| | ||||| | Sbjct 1136 AAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTCGCCGATCCTT 1077 Query 24001 T----TTATCACATGCACGAGCCCAGCGTACGCCGTGTGTTTATCGACTCTGTCGAAGAG 24056 | || | | || | | || | || | ||| | | || || | ||| Sbjct 1076 TCTTCTTTTTAGTTGACAAATCTAAGAGAACAC----GATTTGTGCAGTCAGTTAAGGAG 1021 Query 24057 TTTTTGTTAACGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTCCCCGGCGGC 24116 ||| | |||| |||||||||||||| || || || || |||||||||||||| || || Sbjct 1020 TTTCTTCTAACATGGAAATTCTTTGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGT 961 Query 24117 AAAGGGGCAAATCC 24130 ||||| || || || Sbjct 960 AAAGGTGCTAACCC 947 >seq48588 Length=2845 Score = 136 bits (150), Expect = 4e-27 Identities = 442/685 (65%), Gaps = 10/685 (1%) Strand=Plus/Plus Query 145103 TTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTG 145162 || || || || ||||||||||| || | ||||| || ||||| || || | || || Sbjct 657 TTTGATGTAAATGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTT 716 Query 145163 GGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGC 145222 ||||| || | ||||| |||||||||| || || || || | ||| || || Sbjct 717 GGCATAGGTGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTGAGG 776 Query 145223 GTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCC 145282 | |||| | ||| || || || | ||||||||| || ||||| | || || Sbjct 777 ACAGCCCAGTTCCAAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCT 836 Query 145283 TCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGC 145340 | ||| || || || |||||| | | ||||| ||| || |||| || | || | Sbjct 837 TGGCTAGCTGGACTTCCTTGATATGTGCTGTA--TGCGCCTTCTTTTTCTGCTAATTCAC 894 Query 145341 AACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCG 145400 |||| || || | || || |||||||||| || ||||| || || || || | Sbjct 895 AACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTG 954 Query 145401 CTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTC 145460 ||| || || ||||| || || | || || ||||| | ||| || | ||||| | | Sbjct 955 CTTTCTCACTTTCGTAAGGTATTCTCATCAACACAAATGTATCTGCCATACCCTGAACAC 1014 Query 145461 CCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGAT 145520 | | ||||| || || || |||| || | | || || |||||| | Sbjct 1015 CAATACCGATAGGTCGGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGT 1074 Query 145521 TACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTT 145580 || || || | ||| || || ||| | || | |||||| || | || |||| Sbjct 1075 TAACATCAATGACTTTGTTTAAATTTTGAGTCACAATCTTTGTGATTTCTTTTAATTTTT 1134 Query 145581 CAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAAT 145640 ||| | ||| | | | ||||| | | | || | || || || || | | Sbjct 1135 TAAAATTAAATCTATTATTTTCAACAAACT------TGTTAAGTGCTATGGAAGCAAGGT 1188 Query 145641 TACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700 | || |||||| || || | ||||||| || | ||| | ||| | |||||||| Sbjct 1189 TGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTAC 1248 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 |||| || || || ||||||| |||||||| ||||||||||| || ||||| || | || Sbjct 1249 ATTTAATAGTGCCAAGATTTTTTTGATTACTCTTCCTGTTGCAAGCATCCTTATATAACA 1308 Query 145761 TGTACGGTCCGCCAGTCTCCACCTG 145785 | || ||| ||||||||||| || Sbjct 1309 TATATGGTGTACCAGTCTCCACTTG 1333 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 146279 ATGCCGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATC 146338 || || ||||| |||||| | || | | || ||||| ||| | | ||| | | || Sbjct 1830 ATACCTTCAATACTATCGTCTTTCATAGCTATAAGGAAGCAAGAGGAAAGCTGTGGCCTC 1889 Query 146339 GGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAAC-ATTTTTCGGCTCATCAT 146397 || || | || ||||||| || ||||| || || ||||| |||| || | |||||| Sbjct 1890 GGTGTAGCTGCTGAGAACAGTGTAGGGCTTGCATGTGTAAAATATTTCTCTGA-CATCAT 1948 Query 146398 CCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCAT 146457 ||| || | ||| || | |||||| || ||||||||||| | | ||| | ||| Sbjct 1949 ATTATAAGTATTGATTGCACTATCAATGTCTTCACCATGAATGCCTATGGAGACTCTCAT 2008 Query 146458 GAGCATGTGTTGGGGCCGCTCCGCCAC 146484 ||||||||||| || | |||||||| Sbjct 2009 AAGCATGTGTTGAGGTCTTTCCGCCAC 2035 >seq6747 Length=1699 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || || || | || || || |||||||||||||| ||| Sbjct 1323 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAA 1382 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || | ||||| || ||| |||| | ||||||||| || || ||| Sbjct 1383 AGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGG 1442 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| |||||| || | | || | |||||| | || || | Sbjct 1443 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1502 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || ||||| ||||| || ||||||||||| Sbjct 1503 TCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 >seq115306 Length=588 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 131112 CTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGT 131171 ||||||||| ||||| ||||| |||||||| ||| || ||||| | ||| | ||| Sbjct 179 CTGCTGGTCTGGAGGAATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTCTCGATAGT 120 Query 131172 ATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTG 131231 || | || ||||| || | ||| | ||| ||||| ||||| ||||| ||||||||||| Sbjct 119 GTCCGAGGGCTCGACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAAATCTG 60 Query 131232 CATGA 131236 ||||| Sbjct 59 CATGA 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470168864296320