Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq6932 154 1e-32 seq6747 102 7e-17 >seq6932 Length=2340 Score = 154 bits (170), Expect = 1e-32 Identities = 756/1191 (63%), Gaps = 29/1191 (2%) Strand=Plus/Plus Query 95829 ATATTCATGGCATTAAGCAGATCGCCATTGTCAGCGTCTATTTCCCAGGCAAACAAACCT 95888 || ||||||||||| || ||||| || || |||||||| |||||||| ||||| | ||| Sbjct 257 ATGTTCATGGCATTCAGTAGATCACCGTTATCAGCGTCGATTTCCCAAGCAAAGAGACCA 316 Query 95889 CCTAACTTGTTTTGTTCCACATATCGACCTTTAGCTATAACAGAATCAACACTATCATAT 95948 |||| ||||| | | ||||||| ||| || | ||||| || | || | ||||| Sbjct 317 CCTAGTTTGTTATTTCTCACATATTTACCCTTTTCAATAACTGATCTAGCATTGTCATAG 376 Query 95949 GAAATTAAATCGCCT-TTGGTTTTATCAAAAACGTAGGCGGCTTTTGCTACGTTGTCAAA 96007 | | | || || ||| | | | || | | || | |||| || || ||||| | Sbjct 377 GTTACAAGGTCTCCAGTTGATGGTCTGAAGA-CATAAGGAGCTTGGGCGACATTGTCGTA 435 Query 96008 TTTAACAATATATTTGTTT------ATTTCGTTTTTGATTTGGCGATAATCAACAACGCC 96061 | || | ||| | | ||| || || | | |||||||| || || Sbjct 436 ATGAAATTCCCACTTGCCTTGAGCAACTTCATTCGCAATCTCCCTGTAATCAACCACTCC 495 Query 96062 ATCTTCCCAAGTGCCCGAAACGGGCCCGTTACTACTTCCCAAAAAATAGTTATCGTTTTC 96121 |||| |||||| || || || || || | || || | | || ||| Sbjct 496 GTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTC 555 Query 96122 GTAATT-TGACACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGC 96180 ||||| ||| || |||||||| || ||||| |||||||| || || || | ||| || Sbjct 556 GTAATCATGA-ACGCCAGTCCAACCACGACCATACATGGCAACACCTACTACAATCTTCT 614 Query 96181 GCGGGTCCACGCCTTGATTTGTGAGCAA---TTTAACGGCATGGTCCGTGTTGTACAGCT 96237 || | ||| || || || | ||| ||| || | ||| | |||| | Sbjct 615 TAGGATTCACTCCCTG---TGCCAACAAGTATTTTACTCCGAAGTCAGATGTGTAAGTTT 671 Query 96238 CGTTTGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAATGTTTGACC 96297 | || || |||| |||||||||| || ||||| | ||| | | | ||||||| Sbjct 672 CCTTGGGACTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTATCATTTGACC 731 Query 96298 ACGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGT 96357 | || || || || || || ||||| | || || | || | | ||||| || | Sbjct 732 AGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTGC 791 Query 96358 CGTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACG 96417 |||| | || || ||||| || || | || || ||| || || ||||| Sbjct 792 CGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTTAATTCGTATT 851 Query 96418 TTTTGCCCGTTTGCAGTTGCAA-CTCGTCTAACATCACGCGCAATTCCTTTAATAGAATG 96476 | || || | | || || | ||| || | |||| | || ||||| || | | | | Sbjct 852 TCTTACCATTCTT-AGCTGAGAGCTCATCGAGCATCTCACGTAATTCTTTCATCAAACTT 910 Query 96477 TTGTACGTGTCAGCGTCGCGCTCTTTGTTGCCGAGCGTCGGGTTGGCGCCTTTACCGCCC 96536 || ||| | || ||| | | ||||| ||||| || |||||||| || Sbjct 911 ACATAACAATCACCATCT---TCTGGGCTACCGAGATCAGGGTTAGCACCTTTACCACCA 967 Query 96537 GGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCTCTG 96596 || || ||||| ||||| || || || || || |||||||| | | ||| || | Sbjct 968 GGGAACTCCCAATCGATATCAACACCATCAAAGAATTTCCATGTTAGAAGAAACTCCTTA 1027 Query 96597 ACGGAGTCTACAAACACGCGCCGTTTTTCCGCGTCGTGCATGTAATA----GAACGGGTC 96652 || || | ||||| || | | | | | || || ||| | ||| || || Sbjct 1028 ACTGACTGCACAAAT---CGTGTTCTCTTAGATTTGT-CAACTAAAAAGAAGAAAGGATC 1083 Query 96653 GGACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGGC 96712 || || ||||| || || ||||| || ||||| || | | || || |||| Sbjct 1084 GGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCTTGTTTTAG 1143 Query 96713 CGCCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTTG 96772 | ||| || || ||||||||||||||||||||||||||||| | ||||| || ||||| Sbjct 1144 TGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCACGAAGACAATCCTTTTTG 1203 Query 96773 CGGTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCCTG 96832 |||||||||| ||| ||||| || ||||| || | ||||| || || |||||| Sbjct 1204 TGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGCT 1263 Query 96833 GCAAGAGCGTTGCAGCGCTTCAAAACTACCGGGTATGGTTTTAAGGGCATCGTTAAGGCC 96892 || || || ||||| |||| ||||| || || ||| | | || || | ||| Sbjct 1264 ACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATTTATGCC 1323 Query 96893 GTCGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGGCAC 96952 || ||||| ||||| || ||||| || || | |||||| | | || || | || | Sbjct 1324 ATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATGAGTAAGATTAGGTATAGGTAT 1383 Query 96953 TTTGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGC 97003 ||||| || || || | | ||| || |||||||| || || || || Sbjct 1384 ACGATCCACGGGGAATTTTCTAGGATAGACACCCCATTCTACGAAGTAGGC 1434 >seq6747 Length=1699 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | ||||| || || || ||||| ||||||||||| | || || | | ||| Sbjct 426 AGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGACAGAGTGCGGCCATCC 485 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| ||||| || ||| | || || ||||||||||| || | |||||| || || Sbjct 486 TCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCT 545 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | ||||||| |||||| |||| ||||| | Sbjct 546 TGGATCTTTGC--CTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATAG 603 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || ||||| |||||||| Sbjct 604 TTTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 637 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||||| || || || || || ||||| ||||||||||||| Sbjct 1323 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAA 1382 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| |||||||| || || || | ||||| ||||| || || || Sbjct 1383 AGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGG 1442 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || || ||| || || | | | ||| || ||| ||| Sbjct 1443 ATGCCCTCTTTGTCTTGGATTTTAGCT--TTTACATTTTCAATAGTATCAGAGGGTTCCA 1500 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || ||||| ||||| || || ||||| |||||||||||||| Sbjct 1501 CTTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||| | ||| || || || |||||||| ||||| || || | Sbjct 1095 CCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCAGAT 1154 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| |||||| || ||| |||| |||| |||||||| || Sbjct 1155 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGA 1214 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || ||||| |||||| | | | |||||| || || Sbjct 1215 ATACCTTCTTTGTCTTGGATCTTTGC--CTTCACGTTTTCAATAGTGTCCGATGGTTCTA 1272 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||||||||| || || || || ||||| ||||||||| Sbjct 1273 CCTCTAAGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 1322 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||||||| || || |||||||| || || || ||||| || | | Sbjct 867 CCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGAC 926 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || |||||||| || || ||| | ||||| ||||| || || || Sbjct 927 AAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 986 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||||||| |||| ||| || | | | ||||| || || | Sbjct 987 ATGCCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACT 1046 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || || |||||||| || || ||||| |||||||| ||||| Sbjct 1047 TCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403545070823770