Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq10872 181 7e-41 seq170 140 2e-28 seq287272 138 8e-28 seq6747 120 2e-22 seq4418 120 2e-22 seq115079 87.8 1e-12 >seq10872 Length=4330 Score = 181 bits (200), Expect = 7e-41 Identities = 133/155 (86%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||||| || ||||||| || | || |||||||||||||||||||||||||| |||||| Sbjct 2215 ATGGGGTCCTTGAACGTGAACAGGAACGTGGCGGACGCGTTCTACCGCTACAAGATGCCG 2274 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||||||||||| ||||||||||| ||||| ||||| || || |||||||| ||||||||| Sbjct 2275 CGCATCTGCGCTAAGGTCGAGGGCAAGGGGAACGGCATCAAGACCGTCATCGTCAACATG 2334 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCAC 6316 || || |||||||||||||| || | || ||||| Sbjct 2335 CCAGAGGTCGCTAAGGCGCTTGGCAGGCCGGCCAC 2369 Score = 84.2 bits (92), Expect = 1e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || || ||||| ||||| || ||||| || |||||||| || ||| |||||| Sbjct 4000 CCCACTAAGTACTTCGGATGCGAGCTCGGCGCCCAAACGCAGTTCGACTTCAAGAACGAG 4059 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGA 6424 ||||||||||| ||||| ||| |||| |||||| |||| || Sbjct 4060 CGCTTCATCGTCAACGGCAGCCATGACTCCGCCAAGTTGCAAGA 4103 >seq170 Length=9931 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7454 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 7395 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 7394 GGTAATATTTAGCCTTA 7378 Score = 96.9 bits (106), Expect = 2e-15 Identities = 64/71 (90%), Gaps = 5/71 (7%) Strand=Plus/Minus Query 25926 TCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAA 25980 |||||||||||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct 9931 TCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 9872 Query 25981 TTAGATGACGA 25991 ||||||||||| Sbjct 9871 TTAGATGACGA 9861 >seq287272 Length=333 Score = 138 bits (152), Expect = 8e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 ||||| ||||| || || || |||| || ||||| || || ||||| ||||| || ||| Sbjct 251 TTTATCCGCAAATTCGTCCTCTGTCCCGAGTGCGACAATCCCGAGACGGAGCTGATAGTG 192 Query 6498 TCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTG 6557 || |||||||| ||||| ||||| || |||||||| |||||||| ||||| |||| || Sbjct 191 TCCACCAAGAGGAACACTATCTCGCAAGGCTGCAAGGCGTGCGGGTACCACGGCACTTTG 132 Query 6558 GATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || || ||||| || ||||||||||||||||| || || Sbjct 131 GAGTTCAACCATAAACTGAATACCTTCATACTGAAGAACCCGCC 88 >seq6747 Length=1699 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||| || ||| | ||||| ||||| ||| ||| || |||||||||||||| | Sbjct 865 TACCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTG 924 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| || | || || ||||| || || ||||| || || || || ||||| | | Sbjct 925 ACAAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTG 984 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| |||||||| ||||| ||| ||||| | | || || ||||| Sbjct 985 GGATGCCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAA 1044 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| ||||| ||||| || || | ||||| || || || ||||| Sbjct 1045 CTTCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| | ||| || ||||| || | |||| ||| || ||||||||||| |||| Sbjct 637 TACCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAG 696 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || || | || || || ||||| ||||| ||||||||||| | || Sbjct 697 AGAGAGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGGG 756 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || ||||| || || || ||||| | | ||| ||| ||| | Sbjct 757 GAATACCCTCCTTGTCTTGTATCTTGGCTTTAACATTTTCAATAGTGTCTGATGGTTCCA 816 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||| |||||||| || || | || || || || |||||||| Sbjct 817 CTTCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | |||||| || ||||| ||||| ||||||||||| || ||||||| Sbjct 1093 TACCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCAG 1152 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | ||||||||| ||||| || || | |||||| || | || Sbjct 1153 ATAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGG 1212 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| || ||| |||||| || | | ||| || ||| | Sbjct 1213 GAATACCTTCTTTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGTTCTA 1272 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || ||||| || || | || || || || |||||||| Sbjct 1273 CCTCTAAGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1321 Score = 84.2 bits (92), Expect = 1e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | || ||||| | ||| || ||||| || ||||| |||| Sbjct 1549 TACCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAG 1608 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || |||||||| || || || || || || ||||||||||| | | Sbjct 1609 AAAGTGTACGACCATCTTCTAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAG 1668 Query 38209 GGACGCCTTCTTTGTC 38224 | | |||||||||||| Sbjct 1669 GAATGCCTTCTTTGTC 1684 >seq4418 Length=3433 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || || ||||||||||||||||| || | | | || || | ||| || |||||||| Sbjct 1052 TCTTTCTGAATATTGTAATCAGATAATGTTCTTCCATCTTCAAGTTGCTTACCGGCAAAA 993 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || | | ||||| || | ||| | ||||||||||||| ||||||| ||| ||||| Sbjct 992 ATCAATCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCCTGAATTTTTGCCTTGACATTT 933 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | ||||| | ||| ||||| ||||| |||||||| || |||| ||||||||| Sbjct 932 TCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACG 873 Query 38307 AATATCTGCAT 38317 || || ||||| Sbjct 872 AAAATTTGCAT 862 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| || | ||||| |||||| || | ||| ||||| |||||||| || | Sbjct 408 CATT-CCACCCCTAAGACGCAGCACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGT 350 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||| ||| | || || | ||| |||||||| || || | | |||||| || | Sbjct 349 CTGACAGTGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTG 290 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||| ||||| ||| ||| ||| ||||| | || || || || Sbjct 289 GAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGATGCTT 230 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||||||| ||||||||||| || |||| ||||| || || || ||||| Sbjct 229 CCACTTCTAAAGTAATAGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 178 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| || | ||||| || || || | ||| || ||||||||||| |||| Sbjct 636 CATT-CCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAAT 578 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | ||| | || || || ||||| ||||| || || || | ||||| || | Sbjct 577 CAGATAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTG 518 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| ||||| ||||||| ||| ||||| | | ||||| | || Sbjct 517 GAGGAATACCTTCCTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTT 458 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| ||||| ||||| || || |||| || || || || || ||||| Sbjct 457 CCACTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| ||||| ||||| || | ||| ||||| ||||||||||| ||||| Sbjct 176 CCACCTCTCAGACGCAGTACCAAGTGCAAAGTCGATTCCTTCTGAATATTGTAGTCAGAT 117 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || ||||| ||||| ||||| | ||| ||||| | ||| Sbjct 116 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATTAGCCTTTGCTGATCTGGGGGA 57 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 | ||| ||||| ||| |||||| ||| ||||| Sbjct 56 ATGCCCTCTTTATCCTGAATTTTCGCCTTAACATT 22 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| || | || || || | || ||||||||||||||||| | Sbjct 864 CATT-CCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGT 806 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||| ||| | || || | ||||||||| ||||| || || | ||||| || | Sbjct 805 CTGACAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTG 746 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || || || || ||||||| ||| ||||| | | ||||| | | Sbjct 745 GGGGAATCCCCTCCTTATCTTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCT 686 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | |||||||| || || || | ||||| || || || ||||| Sbjct 685 CAACTTCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCAT 634 >seq115079 Length=788 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 7135 CTGCGCTGCTGCCCAAAGTGGCCGGCGCGCTTAAACTGCTGTACGACCTAGACATAGTAC 7194 |||| || || || ||| | ||| ||| || || ||||| ||||| || ||||| || Sbjct 52 CTGCCCTCCTCCCGAAACTCCCCGCCGCCCTCAAGCTGCTCTACGATCTGGACATCGTGG 111 Query 7195 AAGAGAAAACGATCATGGAGTGGTTCCACAAGCCGTCGTGCAAG-ACTCTCAGCAAAGAA 7253 | ||| | | |||| ||| | |||||| ||| |||| || | | || || Sbjct 112 ACGAGCGCGCCGTGCTGGACTGGGCCGCCAAGCCCTCGCGCAAATACGCGCCT-AAGGAG 170 Query 7254 GTGATGGCTGACGTGCACCGCCGCGCGCAGCCCTTCCTGAACTGGCTGCAGCAAGCCGAG 7313 ||| |||| ||||||| || ||||||||||||||||| | ||||||||||| ||||| Sbjct 171 GTGGTGGCCGACGTGCTGCGGCGCGCGCAGCCCTTCCTCGAGTGGCTGCAGCAGGCCGAC 230 Query 7314 GATGA 7318 || || Sbjct 231 GAGGA 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333671428297613