Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq48588 511 6e-140 seq289356 100 4e-16 seq111536 91.5 2e-13 seq94045 82.4 1e-10 >seq48588 Length=2845 Score = 511 bits (566), Expect = 6e-140 Identities = 1096/1620 (68%), Gaps = 41/1620 (3%) Strand=Plus/Plus Query 61832 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 61891 |||||| | ||||| | || || ||||| | | | ||| ||||| || |||| ||| Sbjct 255 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAG 314 Query 61892 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 61951 |||||||| ||||||| ||| | |||| ||| ||||| || ||||||||| | Sbjct 315 TACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 374 Query 61952 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62011 || | || | || | ||| || || | |||||||||||| || || || ||||| || Sbjct 375 TAGTTAGGTTTAGCAACATGTATGTTGAAAGATTGACTTTGGTCTATAAACGCTCCTCTA 434 Query 62012 TCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 62070 || || ||||| | ||| ||| || ||| ||| ||||| | ||||| || || || Sbjct 435 TCAGCGGCCATCTGTATGGACGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCT 494 Query 62071 CTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATCCT 62127 |||| | |||| || | ||| | |||| | || |||||| | ||||| Sbjct 495 CTTATT-TCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 553 Query 62128 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 62187 ||| || || || |||| |||||| | | || ||| | | || ||||| | || Sbjct 554 ATTTTTCATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGTT 613 Query 62188 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62247 ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||||| Sbjct 614 CACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAATGGTTC 673 Query 62248 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62307 | ||| ||| | || || | |||||| ||||| || ||||| ||||||||||| | ||| Sbjct 674 AAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTTGGCATAGGTGCTATCAA 733 Query 62308 TAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAA 62365 || | ||| | | ||| ||||| || || || ||||| || |||| |||||| Sbjct 734 TAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTTCCAA 791 Query 62366 AGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGA 62424 || || | || || || ||||| | || || | || Sbjct 792 AGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTAGCTGGACT- 850 Query 62425 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 62484 |||| |||||| ||||| ||||| || || |||| ||||||||| || |||||||| Sbjct 851 TCCTTGATATGTGCTGTATGCGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGC 910 Query 62485 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAA 62544 ||| |||||||| ||||| || || | | ||| || | |||| | || || | Sbjct 911 ACCATAATAAATTGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGTA 970 Query 62545 TGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 62603 || || | | | | | ||| | ||||| | || |||||||||||||||||||||| Sbjct 971 AGG-TATTCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGATAGGTC 1029 Query 62604 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62663 || ||| |||| || ||| ||||| || | ||||||| | |||| ||| || | || Sbjct 1030 GGTGCCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTT 1089 Query 62664 TATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 62720 | || | |||| | ||||| ||||| | || || | ||| ||||| ||||| Sbjct 1090 TGTTTAAATTTTGAGTCACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAATC 1146 Query 62721 GCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 62780 || | |||||| |||| | ||| | || || || || || || || || |||| Sbjct 1147 TATTATTTTCAACAAACTTGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCAT 1206 Query 62781 TAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 62837 | || | | ||||| | | ||||||||||||||| ||||| || || || || | Sbjct 1207 ---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAA 1263 Query 62838 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAG 62897 ||||| |||||||||||| |||| || ||||||||||| | || |||| ||||||| Sbjct 1264 GATTTTTTTGATTACTCTTCCTGTTGCAAGCATCCTTATATAACATATATGGTGTACCAG 1323 Query 62898 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT 62957 | || | |||| ||||||||| | ||||| | || |||| | | | | ||| | Sbjct 1324 TCTCCACTTGAGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT--GTTTTAT 1381 Query 62958 ATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63015 | | ||| |||| || ||| | ||| | | ||| || || ||||| || | Sbjct 1382 AAACCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCATAACAGTC 1441 Query 63016 GTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---AC 63072 | || |||||||| |||| |||||||| | ||| ||| |||||||| || Sbjct 1442 AGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAATCT---TCATCCTTTTCTAC 1498 Query 63073 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 63132 || ||||||||| ||||| || ||||| | || ||| || ||||| | ||| ||| Sbjct 1499 TCTTTTCATAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTTGCTCTCATTTC 1558 Query 63133 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63192 || || ||||| ||||| || | ||| |||||| | | || || | |||||| || || Sbjct 1559 TTCCTTACCTGTGTTCTTCTTTAAATCTAGGAACTCAAATATGTCCGCATGCCAAGGCTC 1618 Query 63193 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63252 ||||| || || | | || || ||||||||||| || ||||||| ||||| || || Sbjct 1619 TAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGT 1678 Query 63253 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGAT 63312 || || || |||||||||||||| | | |||||| || ||||| || || | || Sbjct 1679 ATTGTTGTACACTCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGTACCAGCTAT 1738 Query 63313 ATAGCTTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 63369 ||| || ||| | || || || || || |||||| || || || ||| Sbjct 1739 ATAAGACCCCTGGGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCGGCAGATTT 1795 Query 63370 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 63429 ||| |||||||| ||| ||||||| |||||| | || || || |||||||| || |||| Sbjct 1796 AGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATACTATCGTCTTTCAT 1855 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 ||| |||||||| || ||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 2253 CTTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 2312 Query 63670 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 2313 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2363 >seq289356 Length=614 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63821 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 || || || ||||| |||| ||| |||| |||||||| || || | |||||||||||| Sbjct 511 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCA 452 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 ||||| | |||||| ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 451 GGATGATCTGTAGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 392 Query 63941 GTTACACCATTATATATTCC 63960 ||||||||| |||||| || Sbjct 391 GTTACACCAGAATATATGCC 372 >seq111536 Length=3730 Score = 91.5 bits (100), Expect = 2e-13 Identities = 243/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 155184 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATT 155241 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 2907 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTAT 2964 Query 155242 TAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGT 155301 ||||||| |||| || |||||| |||| | ||||| ||||| || | || ||||| Sbjct 2965 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 3024 Query 155302 TCATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTTA 155361 ||||||||| || ||||| | ||| | | | ||||||||| | || | Sbjct 3025 TCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 3084 Query 155362 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 155421 ||||| | || | ||||| || |||| ||||||||| |||| | | | | Sbjct 3085 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAAGCATTTCCTAAAGGAGCTGATTTGAT 3144 Query 155422 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTCCCGTTTGGAAG 155478 |||||| ||||| | || | || || | ||| || ||| | || ||||| | Sbjct 3145 TTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTTGGTAC 3204 Query 155479 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGA 155538 |||||||| |||||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 3205 ATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 3264 Query 155539 CTGTTTGTA 155547 || || || Sbjct 3265 TTGCTTATA 3273 >seq94045 Length=338 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || |||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 307 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 248 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 || ||||| ||||||| ||||| || ||||| || Sbjct 247 CATATGTCCGGATATTGGATTGGGAATATAACGAA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631156692830800