Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6932 235 5e-57 seq4418 158 1e-33 seq6747 136 3e-27 seq201180 107 2e-18 >seq6932 Length=2340 Score = 235 bits (260), Expect = 5e-57 Identities = 848/1304 (65%), Gaps = 42/1304 (3%) Strand=Plus/Plus Query 56979 CATAGTATTAAGTAGGTCGCCGTTGTCGGCATCTATCTCCCATGCAAACAAACCACCAAG 57038 ||| | ||| ||||| || ||||| || || || || ||||| ||||| | |||||| || Sbjct 262 CATGGCATTCAGTAGATCACCGTTATCAGCGTCGATTTCCCAAGCAAAGAGACCACCTAG 321 Query 57039 TTTCGAATTTACCACATACTTTGCTTTGTCCGTCACGGAATCTA-CACTGTCATAACTAA 57097 ||| |||| |||||| || | || || | || || |||| || ||||||| | | Sbjct 322 TTTGTTATTTCTCACATATTTACCCTTTTCAATAACTGA-TCTAGCATTGTCATAGGTTA 380 Query 57098 TCAAA---TCCTGTGTTTCGGCATCGAAAACGCTTGCTGCCTTGGCCACGCTGTCGTA-T 57153 ||| ||| || | | | ||| || | || | ||| || ||||||| | Sbjct 381 -CAAGGTCTCCAGTTGATGGTCT--GAAGACATAAGGAGCTTGGGCGACATTGTCGTAAT 437 Query 57154 GAGTATGTGTATCGACCTCGGTTTATTTCGCTTGCAATTTGCTTGTAATCAACCACGCCT 57213 || | | | ||| | | ||| | ||||| | | ||||||||||||| || Sbjct 438 GAAATTCCCACTTG-CCTTGAGCAACTTCATTCGCAATCTCCCTGTAATCAACCACTCCG 496 Query 57214 TCCTCCCACGTGCCGTGCACAGGCCCACTTCCTTTACCCGTGAACGGATTGTTGTCCGTG 57273 || | ||| || || | ||||| ||| | | || || ||||| ||| ||||||| | Sbjct 497 TCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTCG 556 Query 57274 TAGTCGTGCACACCCGTCCATCCTCGACCGTACATGGCCACGCCAACCACTATTTTGTCA 57333 || || || || || ||||| || ||||| |||||||| || || || || || || | | Sbjct 557 TAATCATGAACGCCAGTCCAACCACGACCATACATGGCAACACCTACTACAATCTTCTTA 616 Query 57334 GCGGACACGTTCTGCGCTAACAAAGTGCGTACAGCATTGTCTGTGGTATATGGTTCGCTA 57393 | ||| ||| || ||||| ||| | ||| | || || | ||| | Sbjct 617 GGATTCACTCCCTGTGCCAACAAGTATTTTACTCCGAAGTCAGATGTGTAAGTTTCCTTG 676 Query 57394 GGGTTCCACAGAGGCGCATA-AATGTTGGTTTGATAGCCCAAATTTGTGTTACTCCAGGC 57452 || |||| |||||| || |||| | ||||||| || | | | || |||||| Sbjct 677 GGACTCCATGCAGGCGCGTACAATGGT-GTTTGATGTCCAAGAGTATCATTTGACCAGGC 735 Query 57453 ACCTTTAAAATCGTACGACATTAAGAATATGCTGTCGAGATATTTTTGCGCATGATTGTA 57512 || || || || || ||| ||||| || || | ||| ||||| || | ||| Sbjct 736 TCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTGCCGTA 795 Query 57513 ATCGACAAGTTCGATTTTATCATTACCGGCGCCGATGGCTGTTGTGAGCAATAG--TTTA 57570 || |||| || ||||||||| || | || || || | || | | | | ||| Sbjct 796 GTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTTA--ATTCGTATTTC 853 Query 57571 CGATCAGTTTCCAGTTCCAACTCGTCCAACATTAATCTCAAATCTTTCAATAGCCGCACG 57630 | || | | | | ||| || | ||| | || ||||||| | | || Sbjct 854 TTACCATTCTTAGCTGAGAGCTCATCGAGCATCTCACGTAATTCTTTCATCAAACTTACA 913 Query 57631 TATGTTTCTCCGTCGCGACCAGGGTCGCCCAACAAAGGATTAGCACCATTACCACCAGGA 57690 || || || || | ||| || | ||| |||||||| ||||||||||| Sbjct 914 TAACAATCACCATC---TTCTGGGCTACCGAGATCAGGGTTAGCACCTTTACCACCAGGG 970 Query 57691 AATTCCCAATCAATGTCGACTCCATCAAAAAATTTCCACACTTTGATG-TAGTCGCGCAC 57749 || |||||||| || || || |||||||| |||||||| || || | | || || Sbjct 971 AACTCCCAATCGATATCAACACCATCAAAGAATTTCCA-TGTTAGAAGAAACTCCTTAAC 1029 Query 57750 CGATTGCACAAA-AGTGTTGCGAATAGTGTCGTCGTGCATGAAAAAGAAGGGATCCGATA 57808 || |||||||| ||||| | ||| | ||| | || ||||| ||||| | | Sbjct 1030 TGACTGCACAAATCGTGTT-CTCTTAGATTTGTCAACTAAAAAGAAGAAAGGATCGGCGA 1088 Query 57809 AGGTCCAACCACCAATGGATGGCAATACTTTTAGATGC-GGATATGCTTTTTTGACCGCC 57867 ||||| |||||||| || || || | | || || | || |||| ||| | | | Sbjct 1089 GCGTCCACCCACCAATAGA-GGGAAGAATCTTCAATTCAGGGCGGGCTTGTTTTAGTGAC 1147 Query 57868 ATCAGTTGACCAAAATTACCTTTGTAAGGTTCGTTCCAAGCCGATACTCCTTGTTGAGGC 57927 || | ||| ||||| || |||||||| || |||||||| | || | ||||| ||| || Sbjct 1148 ATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCACGAAGACAATCCTTTTTGTGGT 1207 Query 57928 TTTTGTAGCGCCGCCCAAGGATCGTGTATCGTTACTTTGAAATCTTCTCGGCCTGCACAC 57987 ||||||| || ||||| |||||||| || | |||||||| || || ||||| ||| Sbjct 1208 TTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGCTACAG 1267 Query 57988 GAACGTTGCAACGCTTCAAAACTACCTGTAATCGTCTTTAGACTGTCGTTGATGCCATCG 58047 || || |||| |||| ||||| ||| ||| |||| ||||| || |||||||| Sbjct 1268 GACCGCTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATTTATGCCATCA 1327 Query 58048 CCTCCGCAAATAGGCACGAAACCGTACAACAAATGAGTCAAATTGGGTACGGGTACTTTA 58107 || |||||||| || | || || || | ||||||||| | ||| |||| |||| | Sbjct 1328 CCGCCGCAAATTGGAATAAAGCCATAGAGCAAATGAGTAAGATTAGGTATAGGTATACGA 1387 Query 58108 TCAACTGGATATTTACGACCGTACACACTCCACTCCACGAAATAAGCTCCCACGATCAAT 58167 || || || |||| | | || |||| ||| || ||||| || || || | ||| Sbjct 1388 TCCACGGGGAATTTTCTAGGATAGACACCCCATTCTACGAAGTAGGCGCCTA----CAAC 1443 Query 58168 TTTTGGTCTGGTGACAAAGGTT--CATGA--GGTTTATTGTTTTCTTGCCAAGTATAGTG 58223 |||| || | ||| | | | || ||||| |||||| | | ||||| | Sbjct 1444 TTTT---------CCAGATGTTTGCTTAAATGGCTTATTTTTTTCTCCCAATGTATATTC 1494 Query 58224 CAGAGGTTGTAGGTGAGCTCCGTCAGTGTCGGCAACGACAATTT 58267 |||||| ||| ||| ||| ||||| || || |||||||||| Sbjct 1495 CAGAGGCGGTAAATGACTTCCATCAGTATCAGCCACGACAATTT 1538 >seq4418 Length=3433 Score = 158 bits (174), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||| |||| || || | |||||| | |||||||| | || Sbjct 405 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTC 464 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || || | || ||||||| ||| ||||| ||||| ||||| || |||| Sbjct 465 TGATACAATAGAAAATGTTAAGGCAAAAATTCA-AGACAAGGAAGGTATTCCTCCAGACC 523 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | | ||||| ||||||||||| || ||||||| |||||| | ||||| | Sbjct 524 AACAGAGACTGATTTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTATCTGATTATA 583 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||||||||| || | || ||||| || | ||||| || |||| Sbjct 584 ATATTCAAAAAGAATCTACTTTGCACTTAGTTCTGCGTCTAAGGGGTGGAA 634 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || | || || || | || || | ||||| ||| | || Sbjct 633 AATGCAAATTTTTGTAAAAACACTTACAGGCAAGACTATTACTCTTGAAGTTGAGCCTTC 692 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || || | ||| |||||| ||| || || || |||||||| || |||| Sbjct 693 TGATACAATTGAAAATGTTAAGGCAAAAATTCAA-GATAAGGAGGGGATTCCCCCAGACC 751 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| || |||||||||| || |||||| | ||||||| ||||| || || |||| Sbjct 752 AACAGAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTACA 811 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||| ||||| || | || ||||| ||| | || ||||| |||| Sbjct 812 ATATTCAAAAGGAATCTACCTTGCACTTAGTACTACGACTGAGAGGTGGAA 862 Score = 129 bits (142), Expect = 5e-25 Identities = 169/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || || |||| || ||| | |||||| | ||||| || | || Sbjct 861 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 920 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||| || || || |||| | ||||||| ||| ||||||||||| ||||| || | Sbjct 921 TGATACAATAGAAAATGTCA---AGGCAAAAATTCAG-GACAAAGAAGGCATTCCCCCAG 976 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||||||| | | ||||||||||| || ||| | ||||||| | || | |||| Sbjct 977 ACCAACAGAGATTGATTTTTGCCGGTAAGCAACTTGAAGATGGAAGAACATTATCTGATT 1036 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| |||||||| || || || | || || || || ||||| || Sbjct 1037 ACAATATTCAGAAAGAATCTACCCTTCACCTTGTTCTCAGACTCAGAGGTGG 1088 >seq6747 Length=1699 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| | || || ||| ||||||| | || || || | || Sbjct 1322 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCTTAGAGGTAGAACCATC 1263 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || ||||| ||| ||| ||||||||||| ||||| || ||||| Sbjct 1262 GGACACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCA 1203 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| || |||||| | ||||||| || || | ||||| || Sbjct 1202 ACAAAGGCTCATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTATCTGATTATAA 1143 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||| ||||| || ||||||||||| Sbjct 1142 CATTCAAAAGGAATCTACTCTACATTTAGT 1113 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || ||| | || || | ||||| || | ||| Sbjct 1093 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACGTTAGAAGTTGAAGCCTCT 1034 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| |||||||| || || |||||||| || Sbjct 1033 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 974 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| ||||| || || ||||| ||||||| ||||||| || ||||||||| Sbjct 973 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCAGATTACAAT 914 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| ||||| || || || || || | || ||||||| Sbjct 913 ATTCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGG 867 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || ||| | ||||| | || |||||| | || Sbjct 637 ATGCAGATCTTTGTTAAGACACTTACTGGGAAAACTATCACTTTGGAGGTGGAGCCATCC 578 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| ||| ||| || || || || ||||| || |||||| Sbjct 577 GACACTATCGAAAATGTTAAGGCAAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAA 518 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || ||||| || || |||| |||||| || || ||||| Sbjct 517 CAGCGTCTCATCTTTGCTGGTAAACAGTTGGAGGATGGCCGCACTCTGTCGGACTACAAC 458 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || | |||||||| || Sbjct 457 ATCCAAAAAGAATCTACTTTGCATTTAGTACT 426 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | || || ||| | |||||| | |||||||| | || Sbjct 865 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTGGAACCATCA 806 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || | || |||| || | || ||||| || || ||||| || || Sbjct 805 GACACTATTGAA--AATGTTAAAGCCAAGATACAA-GACAAGGAGGGTATTCCCCCAGAT 749 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | |||||||| || || || | || |||| ||| ||| | || ||| Sbjct 748 CAACAACGTCTAATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTAC 689 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| ||||| ||||| | || || || || | ||||||||||| Sbjct 688 AATATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTCTAAGAGGAGG 639 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| ||||||||||| ||||| || || ||||| || ||||||| || ||||| Sbjct 1693 AAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAACAACGTCTTATTTTCGCGGGCAAG 1634 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||||||||||||| ||| || | || ||||| || ||||||||||| || | ||| Sbjct 1633 CAATTAGAAGATGGTCGTACACTTTCTGACTACAACATCCAAAAAGAATCTACTTTGCAT 1574 Query 25203 TTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || | ||||||| || Sbjct 1573 TTAGTACTTCGTTTAAGAGGTGG 1551 Score = 104 bits (114), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || || |||| || | |||||||| | ||| Sbjct 1549 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTCT 1490 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| || |||||||| || || || ||||| Sbjct 1489 GATACTATTGAA--AATGTAAAAGCTAAAATCCAA-GACAAAGAGGGCATCCCGCCTGAT 1433 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| |||| || || || || ||||| ||||| | |||||| | ||| ||| Sbjct 1432 CAGCAGCGTCTTATCTTCGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCCGACTAC 1373 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || |||||||||||||| || || || || || Sbjct 1372 AACATTCAAAAAGAATCTACTCTTCACTTGGT 1341 >seq201180 Length=367 Score = 107 bits (118), Expect = 2e-18 Identities = 151/206 (73%), Gaps = 7/206 (3%) Strand=Plus/Plus Query 51082 CACATACA-ACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAG 51140 ||||||| ||| |||||| |||||||| | || || || ||||||||||| || | Sbjct 69 CACATACTTACCAACATAACCATTAGGATCTCTGCCGTCAACACTGTAATGATCATTCAA 128 Query 51141 AAATATGGCATAACCCAATGCCATGTCTGCACTAG-GCGTCCATTCCATAATTTTCTTGG 51199 | || ||| | ||| ||| ||| | | | | |||||||||| ||| |||||| Sbjct 129 GTAAATAGCAAAGTTCAAAGCC-TGTTCGGGCGACTGGGTCCATTCCAAAATCTTCTTGC 187 Query 51200 CCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTC--GCAACGAAGCTGCGCTTGAGC 51257 |||||||||||| | | |||| |||||||||||||| || | ||||| |||||| Sbjct 188 ACCAGTACATGCGTAGGAAACCATGCATCTTGCCCTCTTTCACC--AGCTGTATTTGAGC 245 Query 51258 CGAGTTCCACAATTCGTCGTGAGTTT 51283 |||||||| || || ||||| |||| Sbjct 246 TGAGTTCCATAAGTCATCGTGTGTTT 271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431677508220245