Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq6932 212 4e-50 seq6747 109 4e-19 seq4418 107 1e-18 >seq6932 Length=2340 Score = 212 bits (234), Expect = 4e-50 Identities = 442/645 (69%), Gaps = 35/645 (5%) Strand=Plus/Plus Query 84237 GGGTTGGCTCCTTTGCCTCCCGGAAATTCCCAATCGATGTCTACACCGTCGAAAAATTTC 84296 ||||| || ||||| || || || || ||||||||||| || ||||| || || |||||| Sbjct 947 GGGTTAGCACCTTTACCACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATTTC 1006 Query 84297 CATACTTGTAAAAACTCCTTAACCGAATTTACAAAAACGT-TTCTTTTTTCAACATTGTG 84355 ||| | | | |||||||||||| || | ||||| ||| |||| || | |||| Sbjct 1007 CATGTTAGAAGAAACTCCTTAACTGACTGCACAAAT-CGTGTTCTCTT---AGATTTGTC 1062 Query 84356 CATGAAATAAAAC---GGGTCCGACAACGTCCATCCTCCTATGGACGGAAGAATCT---- 84408 | ||| | || || || | | |||||| || || || || |||||||||| Sbjct 1063 AACTAAAAAGAAGAAAGGATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAA 1122 Query 84409 TTAGGTGCGGGTTCGCCAATTTAGCTGCCATCAATTGTCCAAAATTGCCTTTATACGGTT 84468 || | ||||| | | ||||| || ||| ||||| ||||| |||||||| || || | Sbjct 1123 TTCAGGGCGGGCTTG---TTTTAG-TGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCT 1178 Query 84469 CGTTCCAAGCGGACACGCCCTTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGGATGG 84528 ||||||| | |||| || ||||| || ||||||| || ||||| ||||||||||| | Sbjct 1179 CGTTCCACGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTG 1238 Query 84529 CAATTTTAAAATCCGCACGTCCCCTGCACGATCGTTGCAGAGATTCGAAACTACCGGGTA 84588 | ||| || ||| |||| || || || || || ||||| | || |||||| || | Sbjct 1239 AGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCGA 1298 Query 84589 TCACTTTGAGAGC-ATCGTTTATTCCATTACCGCCGCAAATGGGTATGAAACCGTACAAC 84647 || |||| | ||| || ||||| |||| |||||||||||| || || || || || | | Sbjct 1299 TCTCTTTTA-AGCTGTCATTTATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGC 1357 Query 84648 AAGTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAATTGCGCCCGTACACTCCC 84707 || || | | ||| || | || | || ||||| || || | || || ||| Sbjct 1358 AAATGAGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTTCTAGGATAGACACCC 1417 Query 84708 CATTCAACAAAATACGCAGCAACCGTTTTATCGTCTCTTCTGC----CCGGTTTGTTGTT 84763 ||||| || || || || | || ||| | | || ||| || || || || Sbjct 1418 CATTCTACGAAGTAGGCGCCTACAACTTTTCCAGATGTT-TGCTTAAATGGCTTATTTTT 1476 Query 84764 TTCCCGCCATGTATATTCCAGCGGAGCCAAATGACCGCCGTCGGTGTCTGCCACTTTGAC 84823 ||| | | ||||||||||||| || | ||||||| || || || || ||||| ||| Sbjct 1477 TTCTCCCAATGTATATTCCAGAGGCGGTAAATGACTTCCATCAGTATCAGCCAC---GAC 1533 Query 84824 CAACAC---GGAATCGCTCACGGAA---CAGCCGTCCTCATTGCA 84862 | | || |||||| |||| |||||||| |||||||| Sbjct 1534 AATTTCGGTGGGATCGCT---GGAACTGCAGCCGTCTTCATTGCA 1575 >seq6747 Length=1699 Score = 109 bits (120), Expect = 4e-19 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||||||| | || || ||||| ||||| | ||| |||||| | Sbjct 1093 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACGTTAGAAGTTGAAGCCTCT 1034 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || | ||| ||||| || |||||||| | ||||| | Sbjct 1033 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGCATCCCACCTG---AT 977 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||| | |||||||||||||| || ||| | |||||| ||| || | |||||| Sbjct 976 CAGCAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCAGATTAC 917 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || || || ||||| ||||| | ||| | |||||||| Sbjct 916 AATATTCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGG 867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| |||| || || |||||||| ||||| |||| || | Sbjct 1549 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTCT 1490 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||||| || |||||||| | || | || Sbjct 1489 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCGCCTGATCAG 1430 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | |||||||| ||||| || ||| | ||||| ||| | |||| ||||| Sbjct 1429 CAGCGTCTTATCTTCGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCCGACTACAAC 1370 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || |||||||||||||| ||||||| ||| | || || ||| Sbjct 1369 ATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCGTGGTGGA 1322 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| |||| || | || || |||||||| ||| | || ||| | | Sbjct 1322 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCTTAGAGGTAGAACCATC 1263 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | | ||| ||| || || ||||| ||| | || | |||| Sbjct 1262 GGACACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCA 1203 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAA--AAACTATGGCCGATTAC 22010 ||| || || || |||||||| |||||||| |||||| | ||||| | ||||| Sbjct 1202 ACAAAGGCTCATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTAT--CTGATTAT 1145 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| |||||||||||||| ||| | ||||| ||| | || || || Sbjct 1144 AACATTCAAAAGGAATCTACTCTACATTTAGTATTGCGTCTTCGTGGCGG 1095 >seq4418 Length=3433 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | |||||| | || ||||| || ||||| | ||| || | | Sbjct 633 AATGCAAATTTTTGTAAAAACACTTACAGGCAAGACTATTACTCTTGAAGTTGAGCCTTC 692 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| ||||||| ||||| ||||| | || | |||| Sbjct 693 TGATACAATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACCA 752 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| ||||| ||||| || |||||||| |||||| | || || | || ||||| Sbjct 753 ACAGAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTACAA 812 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||| ||||||||||| | || | ||| |||| | |||| ||| Sbjct 813 TATTCAAAAGGAATCTACCTTGCACTTAGTACTACGACTGAGAGGTGGA 861 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | ||||| | || |||||||| || || ||||| ||||| | Sbjct 861 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 920 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| ||||||| || ||||| || | || | |||| Sbjct 921 TGATACAATAGAAAATGTCAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCA 980 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||| | || ||||| || || ||||| |||||| || ||| | | |||||||| Sbjct 981 ACAGAGATTGATTTTTGCCGGTAAGCAACTTGAAGATGGAAGAACATTATCTGATTACAA 1040 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 ||||||||| |||||||| ||||| Sbjct 1041 TATTCAGAAAGAATCTACCCTTCA 1064 Score = 102 bits (112), Expect = 6e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || ||| | || ||||| || || || ||||| |||||| | Sbjct 405 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTC 464 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| ||||||| || || || ||| | ||| | |||| Sbjct 465 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCA 524 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||||| || || || |||||||| | |||||| | ||| | | ||||| || Sbjct 525 ACAGAGACTGATTTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTATCTGATTATAA 584 Query 22013 TATTCAGAAGGAATCTACT 22031 |||||| || ||||||||| Sbjct 585 TATTCAAAAAGAATCTACT 603 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||||||| | || |||||||| ||||| | ||| |||||| | Sbjct 178 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCATCT 237 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||| ||| || || || || | ||| | ||||| Sbjct 238 GACACAATCGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGACCAA 297 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | || || || || || ||||| |||||| | || || | || || ||| Sbjct 298 CAAAGATTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACACTGTCAGACTATAAT 357 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||||||||| ||| | || |||| Sbjct 358 ATTCAGAAGGAATCGACTTTGCACTTGGT 386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356760747738142