Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6932 201 9e-47 seq6747 154 1e-32 seq4418 122 7e-23 >seq6932 Length=2340 Score = 201 bits (222), Expect = 9e-47 Identities = 458/681 (67%), Gaps = 35/681 (5%) Strand=Plus/Minus Query 20272 AAAGGAGGCAAATACAACATGACCGTGAAACTTTGCAATGTTGACGGCTG----TTCAAC 20327 ||||| || | |||| | ||||| ||| |||||||||||| |||||||| | || | Sbjct 1608 AAAGGTGGAAGATACCAAATGACAGTGGAACTTTGCAATGAAGACGGCTGCAGTTCCAGC 1549 Query 20328 AAGC--AGCGCGGTTCAGGTCACCATCGCCGACACCGATGGATCTCATTTAAAACCTTTG 20385 | | | || || ||| | || || || |||||| ||||||| ||| || Sbjct 1548 GATCCCACCGAAATT---GTCG---TGGCTGATACTGATGGAAGTCATTTACCGCCTCTG 1495 Query 20386 ATTTATGACTACATTG----AAAACAATAAACGTTTCGAG-AAGCGTACCGATAAAATCA 20440 ||| |||||| |||| ||||| | || || || | | || ||| | Sbjct 1494 GAATAT----ACATTGGGAGAAAAAAATAAGCCATTTAAGCAAACATCTGGA-AAAGTTG 1440 Query 20441 TTGCTGCATATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTAC 20500 | | || || || ||||||||||| || ||||||||| |||| ||||| || ||| Sbjct 1439 TAGGCGCCTACTTCGTAGAATGGGGTGTCTATCCTAGAAAATTCCCCGTGGATCGTATAC 1380 Query 20501 CCGTTCCCAATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTA 20560 | | || ||| | ||||| |||| ||||||||| | |||||||||||||| ||||| | Sbjct 1379 CTATACCTAATCTTACTCATTTGCTCTATGGCTTTATTCCAATTTGCGGCGGTGATGGCA 1320 Query 20561 TCAACGAC-GCGTTAAAGTTGTCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCGTGC 20619 | || ||| || | |||| || || | |||| ||| |||| || || || Sbjct 1319 TAAATGACAGCTTAAAAGAGATCGAAGGC----AGTTTCCAAGCACTGCAGCGGTCCTGT 1264 Query 20620 GCGGGCCGAGATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAACCA 20679 ||||| || | || ||||| | || |||||||| ||||| || |||| |||||| Sbjct 1263 AGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCA 1204 Query 20680 CAAAAAGGAGTATCCTCTTGGAACGAACCGTACAAAGGAAACTTTGGTCAGTTGATGGCA 20739 ||||||||| | || || |||||||| || |||||||| |||||||| || || ||| || Sbjct 1203 CAAAAAGGATTGTCTTCGTGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCA 1144 Query 20740 ACGAAACTGGCGTATCCTCATCTTAAAGTGCTACCTTCGATCGGCGGGTGGACTTTATCC 20799 |||| || ||| | | || | || || || || || |||||||| | || Sbjct 1143 CTAAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTCGCC 1084 Query 20800 GATCCGTT----TTATCATATGCACGATCCGATCGTACGCCAAGTTTTCATCGATTCTGT 20855 ||||| || || | | || ||| | | || | | || | | || || Sbjct 1083 GATCCTTTCTTCTTTTTAGTTGACAAATCTAAGAGAACACGA----TTTGTGCAGTCAGT 1028 Query 20856 GGAAGAGTTTTTGTTGACGTGGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTTTCC 20915 | |||||| | | || |||||||||||||| || ||||| || || |||||||| || Sbjct 1027 TAAGGAGTTTCTTCTAACATGGAAATTCTTTGATGGTGTTGATATCGATTGGGAGTTCCC 968 Query 20916 GGGAGGCAAAGGTGCGAATCC 20936 || || |||||||| || || Sbjct 967 TGGTGGTAAAGGTGCTAACCC 947 >seq6747 Length=1699 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | ||| |||||||||| |||||||| ||||||||||| ||||| Sbjct 1092 ATACCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCA 1151 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||| |||||||| ||||| | ||||| | |||||||| || Sbjct 1152 GATAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGG 1211 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| |||||| || | | ||||| ||||| | | ||| Sbjct 1212 GGAATACCTTCTTTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGTTCT 1271 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || || ||||| || ||||| |||||||| Sbjct 1272 ACCTCTAAGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1321 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || || || | ||||||||||||||||||||||| ||| Sbjct 1320 ATTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCG 1379 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||||| | ||| || |||||| |||| |||||||| || || || Sbjct 1380 GAAAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGC 1439 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| |||||||| || || ||||| | ||||| || || | || ||| Sbjct 1440 GGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCC 1499 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || || ||||| |||||||||||||| Sbjct 1500 ACTTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 |||||||| | |||||||||||||| |||||||| || || ||| || ||| || Sbjct 429 ACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCC 488 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | ||||||||||| ||||||||||||||||||| || |||||||| || || || Sbjct 489 AACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGG 548 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 |||||| || | | ||| | ||||||| | || || |||| || | ||||| Sbjct 549 ATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATAGTTTTC 608 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || || ||||| |||||||| Sbjct 609 CCAGTAAGTGTCTTAACAAAGATCTGCAT 637 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 |||||||| | |||||||||||||| |||||||| || | |||||| |||||| Sbjct 1569 ACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTACGACCATCTTCT 1628 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 | ||| || || ||| | || ||||| ||||| || |||||||||||||||||||| Sbjct 1629 AATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTC 1684 >seq4418 Length=3433 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || | ||| | || |||||| || | ||||||||||||||||| || ||||| Sbjct 635 ATTCCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCA 576 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| | ||||| || ||| | || || | ||||||||| ||| Sbjct 575 GATAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGA 516 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| ||||| ||| ||||| ||| | | ||| | || || | | ||| Sbjct 515 GGAATACCTTCCTTGTCTTGAAT-TTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTC 457 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| ||||| || ||||||||||| ||||| Sbjct 456 CACTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACG 114223 ||||| | ||| | || | ||||||||||| ||||| |||||||| | | || || | Sbjct 1079 AGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGAATATTGTAATCAGATAAT-GTTCT 1021 Query 114224 AGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTC 114283 |||||||||||| ||||| || | || | | ||||||||| || ||||||||||| Sbjct 1020 TCCATCTTCAAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGGAATGCCTTC 961 Query 114284 TTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGT 114343 |||||| ||| ||| || | | ||| | || || | | ||| || |||| || Sbjct 960 TTTGTCCTGAATTTTTGCCTTGACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGT 901 Query 114344 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||||||| ||||| ||||| || ||||| ||||| Sbjct 900 GATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCAT 862 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 ||||| || | |||||||| |||||||| ||||| || || || || ||||||| Sbjct 842 ACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTGACAGTGTGCGTCCATCTTCA 783 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 |||||||| || || | || || | ||||||||| || ||||| || || || || | Sbjct 782 AGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCTTGA 723 Query 114294 ATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || ||||| ||| | | ||||| || || | | || || || | || | || || Sbjct 722 AT-TTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTCAACTTCAAGAGTAATAGTCTT 664 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || |||||||||||||| ||||| Sbjct 663 GCCTGTAAGTGTTTTTACAAAAATTTGCAT 634 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||| || || || || || || |||||| ||||| || || Sbjct 374 GTCGATTCCTTCTGAATATTATAGTCTGACAGTGTGCGTCCATCTTCCAGTTGCTTTCCG 315 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || | | |||||||| |||||||||||||| ||||| ||||||| || Sbjct 314 GCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTA 255 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | ||||| | | ||| || || | || | |||||||| ||||| ||| Sbjct 254 ACATTTTCGATTGTGTCAGATGCTTCCACTTCTAAAGTAATAGTTTTGCCAGTCAGTGTT 195 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||| ||||| Sbjct 194 TTAACAAAAATTTGCAT 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418534160981076