Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq170 147 2e-30 seq6747 120 2e-22 seq201180 100 2e-16 >seq170 Length=9931 Score = 147 bits (162), Expect = 2e-30 Identities = 93/98 (95%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 3780 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACCGAGTAAGATCTAAGGAACC 3721 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||||||||||||||||||||||| ||||||| ||||| Sbjct 3720 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 3683 Score = 147 bits (162), Expect = 2e-30 Identities = 93/98 (95%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 3780 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACCGAGTAAGATCTAAGGAACC 3721 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||||||||||||||||||||||| ||||||| ||||| Sbjct 3720 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 3683 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 115342 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 115392 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 3842 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 3791 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 114145 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 114195 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 3842 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 3791 >seq6747 Length=1699 Score = 120 bits (132), Expect = 2e-22 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||| ||| || || |||| ||||| ||| ||| |||||||| |||||||||| Sbjct 866 ACCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGA 925 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || | || ||||||||||| || ||||| || || ||||||||||| || Sbjct 926 CAAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGG 985 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTC 34076 | || ||||||||| ||||| ||| | | | || | |||| | ||| Sbjct 986 GATGCCCTCTTTGTCTTGGATTTTAGCCTTTA---CATTTTCAATTGTGTCAGAGGCTTC 1042 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | ||| ||||||||||| || |||||||| ||||| |||||||| Sbjct 1043 AACTTCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 >seq201180 Length=367 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 37827 ACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCAT 37886 || |||||| ||| |||||| | |||||||| ||||| ||| ||||| ||||||||| Sbjct 269 ACACACGATGACTTATGGAACTCAGCTCAAATACAGCTGGTGAAAGAGGGCAAGATGCAT 210 Query 37887 CAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGAC- 37945 | | |||||||| ||||||||||| |||||||||||| | | | || | || Sbjct 209 GGTTTCCTACGCATGTACTGGTGCAAGAAGATTTTGGAATGGACCCA-GTCGCCCGAACA 151 Query 37946 CGCGCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAA 38005 || | |||| || ||||| | |||||| | ||||| | ||||| | ||||| || Sbjct 150 GGCTTTGAACTTTGCTATTTACTTGAATGATCATTACAGTGTTGACGGCAGAGATCCTAA 91 Query 38006 CGGTTACGTCGG 38017 ||||| || || Sbjct 90 TGGTTATGTTGG 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395550039323446