Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6747 129 1e-24 seq4418 109 1e-18 >seq6747 Length=1699 Score = 129 bits (142), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | |||||| | ||| | || |||||||||||| || ||||| | Sbjct 410 TCCACCGCGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGA 469 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || || || || ||||| || || ||||| ||||||||||| ||||| Sbjct 470 CAGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTG---GTCTGG 526 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || || ||||| ||||| || || || || ||||| |||| ||| | || Sbjct 527 GGGAATGCCCTCCTTATCTTGGATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTC 586 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| || ||||| || || ||||| || || |||||||| Sbjct 587 CACCTCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 637 Score = 111 bits (122), Expect = 4e-19 Identities = 143/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || ||||| || | || || || || ||||| | ||||||||| || || Sbjct 1130 TTCCTTTTGAATGTTATAATCAGATAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAA 1189 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | ||||| |||||| || |||||||| || ||||| || || ||||| Sbjct 1190 AATGAGCCTTTGTTGG---TCTGGGGGAATACCTTCTTTGTCTTGGATCTTTGCCTTCAC 1246 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| |||| || | |||||| || | ||||| || || || || |||||||| Sbjct 1247 GTTTTCAATAGTGTCCGATGGTTCTACCTCTAAGGTGATGGTTTTTCCTGTAAGAGTCTT 1306 Query 288459 GACGAATATCTGCATT 288474 || || ||||||||| Sbjct 1307 AACAAAGATCTGCATT 1322 Score = 87.8 bits (96), Expect = 4e-12 Identities = 103/138 (75%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 |||||| | ||| | || |||||||||||| || ||||| | || || || || || Sbjct 1565 AAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTACGACCATC 1624 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTT 288377 ||||||||| || || ||||| || ||||| ||||| |||| || || |||||||| Sbjct 1625 TTCTAATTGCTTGCCCGCGAAAATAAGACGTTGTTG---ATCTGGAGGAATGCCTTCTTT 1681 Query 288378 ATCCTGGATTTTCGCTTT 288395 || |||||||| || || Sbjct 1682 GTCTTGGATTTTAGCCTT 1699 >seq4418 Length=3433 Score = 109 bits (120), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | |||| ||||| | || | || ||| ||||| ||||| ||||| | Sbjct 861 TCCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTGA 802 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||| ||||| | |||||||||||| || || || | |||||| ||||| Sbjct 801 CAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTG---GTCTGG 745 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || || ||||| || ||||| || || || ||||| || | ||| | || Sbjct 744 GGGAATCCCCTCCTTATCTTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTC 685 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || || ||||| || || || || || || || || |||||| Sbjct 684 AACTTCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCATT 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174930826745594