Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6932 194 2e-44 seq6747 123 3e-23 seq4418 100 3e-16 seq119932 91.5 2e-13 seq89899 86.0 7e-12 >seq6932 Length=2340 Score = 194 bits (214), Expect = 2e-44 Identities = 786/1228 (64%), Gaps = 43/1228 (4%) Strand=Plus/Minus Query 94975 GGGGCTTATTTTGTAGAATGGGGCGTGTACGATCGTAAGTTTCCCGCGGACAAGGTGCCC 95034 || || || || ||||||||||| || || | | || || |||| ||| | || Sbjct 1437 GGCGCCTACTTCGTAGAATGGGGTGTCTATCCTAGAAAATTCCCCGTGGATCGTATACCT 1378 Query 95035 ATTCCCAATCTGACGCATCTATTGTACGGTTTCATACCCATTTGCGGAGGCGACGGTATC 95094 || || ||||| || ||| | | || || || || || |||||||| || || || || Sbjct 1377 ATACCTAATCTTACTCATTTGCTCTATGGCTTTATTCCAATTTGCGGCGGTGATGGCATA 1318 Query 95095 AACGACAGTCTAAAACAGGTACCCGGCTCTTTTGAGGCTTTACAAAAATCATGTGCCGGC 95154 || ||||| ||||| || | ||| ||| | || | || || ||| |||| Sbjct 1317 AATGACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTGCAGCGGTCCTGTAGCGGC 1258 Query 95155 AGAGACGATTTCAAGGTTAGCATCCACGACATTTACGGTGCTCTACAAAAACCGCAAAAA 95214 | || || ||||| || |||||||| | | || |||||||||| |||||| Sbjct 1257 CGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAA 1198 Query 95215 GG--TGTTTCCGAATACAATGAACCTTACCGTGGCAATTTTGGCCAGCTCATGGCTATTC 95272 || ||| | || | || || || ||| ||||| |||||||| | ||| || Sbjct 1197 GGATTGTCTTCG--TGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATG-----TC 1145 Query 95273 GCAAACATAATCC-----TCATTTGAAAATTTTGCCTAGCATCGGTGGTTGGACACTGAG 95327 | || | || || | | ||||| ||| | || || ||||| ||||| || Sbjct 1144 ACTAAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTCGC 1085 Query 95328 CGACCCTTTCTATTTTTTCGCCGACGACTATAAACGAAAAGTATTTGTGGACTCTGTTCG 95387 ||| ||||||| ||||| | ||| | | ||| ||| | ||||||| | || ||| Sbjct 1084 CGATCCTTTCTTCTTTTTAGTTGACAAATCTAAGAGAACACGATTTGTGCAGTCAGTTAA 1025 Query 95388 TGAATTCTTGCAAGTGTGGAAGTTTTTCGATGGAGTAGACATCGACTGGGAGTTTCCCGG 95447 || || | | | ||||| || || ||||| || || ||||| |||||||| || || Sbjct 1024 GGAGTTTCTTCTAACATGGAAATTCTTTGATGGTGTTGATATCGATTGGGAGTTCCCTGG 965 Query 95448 CGGAAAGGGTGCCAACCCCGACGTAGGCGATCCTAGCGTGGATGGAAACACATATGTAAC 95507 || || ||||| ||||| || | || | || || ||||| | ||||||| Sbjct 964 TGGTAAAGGTGCTAACCCTGATCTCGGT-AGCCCAGAA--GATGGTGATTGTTATGTAAG 908 Query 95508 TCTATTGAAAGAACTACGCCTAATGCTAGACGAACTGGGTG-------TGGTGAACAAAC 95560 | | |||||||| |||| ||||| || || || | |||| || ||| Sbjct 907 TTTGATGAAAGAATTACGTGAGATGCTCGATGAGCTCTCAGCTAAGAATGGT-AAGAAA- 850 Query 95561 GCGTGTACGAGTTGACCAGCGCCGTGGGAGCGGGCTACGATAAAATAGACGTGATAGATT 95620 ||||| || || || | | | || | |||||||| | || | || | Sbjct 849 -----TACGAATTAACTTCTGCTATTAGCTCTGGATGGGATAAAATCCAAGTTGTTGACT 795 Query 95621 ACTCTTCGGCTAGTCAATATTTGGATCATGTGTTTTTAATGAGTTACGACTTTAAAGGCG 95680 || |||| | ||| |||||||| | || || |||||||| ||||| || || | Sbjct 794 ACGGCAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTATGACTTCAAGGGAG 735 Query 95681 CATGGTCCAACACGGATTTGGGTCATCAAACACCATTGTACGCACCTTCGTGGAACCCTG 95740 | ||||| || | | || |||||||||||||||||||| ||| | |||| || Sbjct 734 CCTGGTCAAATGATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGAGTCCCA 675 Query 95741 ACGACAAGTACACAACTGACTATGCCGTAAAAGAACTGCTTAAGCAAAAAGTACCTTCCA 95800 | || | |||||| |||||| | |||||| | || | || ||| | | | Sbjct 674 AGGAAACTTACACATCTGACTTCGGAGTAAAATACTTGTTGGCACAGGGAGTGAATCCTA 615 Query 95801 ACAAAATTGTTGTGGGAGTCGCCATGTACGGCAGAGGGTGGAGTGGTGTGCACGATTACA 95860 | || ||||| || || || |||||||| || | || |||| ||| || || |||||| Sbjct 614 AGAAGATTGTAGTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGCGTTCATGATTACG 555 Query 95861 AAAACAATAACGTATTTACGGGCGTCGCCACAGGTCCGGTAAAAGGCACATGGGAAAACG 95920 || |||| | || || ||| ||| || || || || ||||| || ||| || ||| Sbjct 554 AAGACAACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGTACTTGGCAAGACG 495 Query 95921 GTGTCGTCGATTATAGGCAAGTT---AACGATTTTAAAAACAGTCCAGCTTACACTTACG 95977 | || || ||||| ||| | || || || || | || | || | | || | Sbjct 494 GAGTGGTTGATTACAGGGAGATTGCGAATGAAGTTGCTCA-AGGCAAG-TGGGAATTTC- 438 Query 95978 CTTACGACAAAGTGGCCGAGGCGCCGTACGTTTACGGCGGATCCGACCAGGCGTTGGATC 96037 ||||||||| || ||| | || || || || | | | ||| | | || || | Sbjct 437 ATTACGACAATGTCGCCCAAGCTCCTTATGTCTTCAGACCATC--AACTGG----AGACC 384 Query 96038 TGATTTCTTACGACGACACGTCGTCGGTATTAGCCAAAGGCGATTACGTGTTACAGAATA 96097 | | | || ||| | | || || | | || || | || ||| | | || | Sbjct 383 TTGTAACCTATGACAATGCTAGATCAGTTATTGAAAAGGGTAAATATGTGAGAAATAACA 324 Query 96098 ATTTAGGTGGTTTGTTTGCATGGGAAATAGATGCCGATAATGGTGATTTGTTAAACGCCA 96157 | |||||||| | ||||| |||||||| || || ||||| |||||| | | || |||| Sbjct 323 AACTAGGTGGTCTCTTTGCTTGGGAAATCGACGCTGATAACGGTGATCTACTGAATGCCA 264 Query 96158 TGAACACAGGTCTGGGCAACAGCCCTGC 96185 |||||| ||||| || ||||| || || Sbjct 263 TGAACATGGGTCTTGGTAACAGTCCGGC 236 >seq6747 Length=1699 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||||| ||| || ||||| ||||| ||| ||| || ||||||||||| |||| Sbjct 638 ACCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGA 697 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || |||||||||||||| || || || || || || || | || Sbjct 698 GAGAGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGGGG 757 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| || || ||| | | | | ||||| | |||||| Sbjct 758 AATACCCTCCTTGTCTTGTATCTTGGCTTTAACATTTTCAATAGTGTCTGATGGTTCCAC 817 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| ||||| || || || |||||||||||||| ||||| Sbjct 818 TTCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| | ||| | ||||| || | ||| ||| || |||||||||||||| | Sbjct 866 ACCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGA 925 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || | || || | ||||||||||| || || || |||||||| || | ||| Sbjct 926 CAAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGG 985 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||| ||||| |||||| || | | | | ||||| | ||| || Sbjct 986 GATGCCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAAC 1045 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||| || ||||| || || || || || ||||| |||||||| Sbjct 1046 TTCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 >seq4418 Length=3433 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || |||| ||||| || || ||||| || || ||||||||||| ||||||| Sbjct 632 CCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGAT 573 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || | ||| || || ||||| || |||| ||| ||||| | || Sbjct 572 AGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGGA 513 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||| | ||| |||||| || | | | | || || | |||||| Sbjct 512 ATACCTTCCTTGT-CTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCAC 454 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||| || ||||| || || ||||||||||| ||||||||| Sbjct 453 TTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 405 >seq119932 Length=1883 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 14751 TACAACATTGGTTTATTTTACTATGTACTGTGGAGTATATGCAGTGGCAAGGAGTGGATG 14810 ||||||| ||||| ||||| ||||||||||||| ||||| ||| || | |||||| Sbjct 677 TACAACAAGGGTTTGTTTTATTATGTACTGTGGAAGATATGTGATGGTAAAAAATGGATG 736 Query 14811 GATAAAAATGTGGCTGCCCAATTC-CTGAA-ATACGTCAA-ACGTCGCATCGAAACCACA 14867 || |||||| | | ||||| ||| ||| || || ||| | |||| ||| Sbjct 737 GACCGAAATGTTGTAGAAAAATTCAAAGAATATATGTTAAGGCGTGTTACCGAA---ACA 793 Query 14868 ACATGCAAGCTTGGACTCTCGTCTCTTCCCTTGGACCCACAAATGAATACGTCACT-CCT 14926 | |||| | |||| || | || ||||| ||||| || ||| | |||||||| ||| Sbjct 794 AAATGCTATATTGGTCTGACCTCCCTTCCTTTGGATCCCTTAATACAAACGTCACTGCCT 853 Query 14927 GACCGCATTATGGTATTGTGTCGACCTCTCATCCGACATATTTAAA 14972 | | || | ||||||||||| || | ||||| ||||||||||| Sbjct 854 G-CAGCGCTCTGGTATTGTGTAGAAATTTCATCATACATATTTAAA 898 >seq89899 Length=492 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 57012 CGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 57071 |||| | |||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 1 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTA 60 Query 57072 CCGAGGATTG 57081 |||| || || Sbjct 61 CCGAAGACTG 70 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541090718826320