Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6932 187 2e-42 seq6747 107 2e-18 seq47026 98.7 1e-15 seq4418 87.8 2e-12 >seq6932 Length=2340 Score = 187 bits (206), Expect = 2e-42 Identities = 377/549 (69%), Gaps = 14/549 (3%) Strand=Plus/Minus Query 27962 GAAAACAACAAGCGCTTTGAT-AAACATCCCGAGAAAATTGTGGCCGCCTATTTCGTCGA 28020 ||||| || |||| ||| | ||||||| || ||| |||| | |||||| ||||| || Sbjct 1479 GAAAAAAATAAGCCATTTAAGCAAACATCTGGA-AAAGTTGTAGGCGCCTACTTCGTAGA 1421 Query 28021 GTGGGGCGTGTATCTGCGGCAGTTTCCCGTCGACAAAGTGCCCGCGCCCAACCTGTCGCA 28080 ||||| || |||| | | || ||||| || | || || || || | || Sbjct 1420 ATGGGGTGTCTATCCTAGAAAATTCCCCGTGGATCGTATACCTATACCTAATCTTACTCA 1361 Query 28081 CTTGCTGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAAACGACGCCCTCAAGAC 28140 ||||| || || || | || || |||||||| || |||||||| ||| | | || | Sbjct 1360 TTTGCTCTATGGCTTTATTCCAATTTGCGGCGGTGATGGCATAAATGACAGCTTAAA-AG 1302 Query 28141 CGTTCCC-GGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGCCGACTTCAAGG 28199 | || ||||||||| | || |||||||| || || ||| || | |||||||| | Sbjct 1301 AGATCGAAGGCAGTTTCCAAGCACTGCAGCGGTCCTGTAGCGGCCGTGAGGACTTCAAAG 1242 Query 28200 TGACGATCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGCGTCTCTACGTGGA 28259 | | ||||||||||| ||||| || | || || || ||||| || | ||| |||||| Sbjct 1241 TCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTGTCTTCGTGGA 1182 Query 28260 ACGAGCCGTACAAAGGCAACTTTGGGCAATTGATGAGCGTCAAATTAGCCAATCCGCACT 28319 ||||||| ||||||||||||||||| ||||| ||| | ||| |||| || | | Sbjct 1181 ACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCCCGCCCTGAAT 1122 Query 28320 TGAAGGTGCTGGCGTCGATCGGCGGCTGGACGCTGTCGGACCCATTC----TTTCACATG 28375 ||||| | || | || || || || |||||||| | || || ||| ||| | || Sbjct 1121 TGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTCGCCGATCCTTTCTTCTTTTTAGTTG 1062 Query 28376 CACGACGCGACCGTGCGCCAAACG-TTCATCGATTCCGTCGTGGACTTTCTGCTGACCTG 28434 || | | | | | | ||| || | | || || ||| ||||| || || || Sbjct 1061 -ACAAATCTA-AGAG---AACACGATTTGTGCAGTCAGTTAAGGAGTTTCTTCTAACATG 1007 Query 28435 GAAGTTCTTCGACGGCGTCGACATCGATTGGGAGTTTCCGGGCGGCAAAGGAGCCAATCC 28494 ||| ||||| || || || || |||||||||||||| || || || ||||| || || || Sbjct 1006 GAAATTCTTTGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGTAAAGGTGCTAACCC 947 Query 28495 CGATGTCGG 28503 ||| |||| Sbjct 946 TGATCTCGG 938 >seq6747 Length=1699 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | |||||||| | | || || ||||| ||||||||||| | Sbjct 411 CCACCGCGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGAC 470 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| | |||||||| | | |||| |||||||||||||| || || Sbjct 471 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 530 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || ||| ||| || | | ||| | ||||||| | ||||||| Sbjct 531 ATGCCCTCCTTATCTTGGATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACC 590 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || || || ||||| |||||||| Sbjct 591 TCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 637 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | |||||| |||||||||| | || |||||||||||||| || || Sbjct 1095 CCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCAGAT 1154 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || |||||||| || | | | || || | |||||||| || || Sbjct 1155 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGA 1214 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| ||| ||| || | | ||| | ||||| | | || ||| Sbjct 1215 ATACCTTCTTTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGTTCTACC 1274 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || ||||| || ||||| |||||||| Sbjct 1275 TCTAAGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || || || | | || || |||||||||||||||||| Sbjct 1323 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAA 1382 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || | ||| || || | |||| |||||||| || || || || Sbjct 1383 AGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGG 1442 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| |||||| ||||| | ||| | || || | | ||||| Sbjct 1443 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1502 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || ||||| |||||||||||||| Sbjct 1503 TCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 >seq47026 Length=2159 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 124740 CGGCTTCTACTACATGGGCGTCGGCGACGAAGTGCGTTGCGCTTTCTGCAAAGTCGAAAT 124799 ||||||||| ||| ||||| |||||| ||||| || ||||| || || ||||| ||||| Sbjct 1961 CGGCTTCTATTACCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAAT 2020 Query 124800 TATGCGATGGCAGCCCGGCGACGAT-CCGCTAACGGACCACAAACGATGGGCGCCTCAGT 124858 |||| |||| | ||||||||| |||| || ||||||| || | |||||||| |||| Sbjct 2021 TATGAAATGGGTTGCGGGCGACGATCCCGCCAA-GGACCACCAAAGGTGGGCGCCCCAGT 2079 Query 124859 G 124859 | Sbjct 2080 G 2080 >seq4418 Length=3433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||||| |||||| || | | || || |||||||| || || || | ||| || Sbjct 621 ACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGATAGAGTGCGTCC 562 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 || || | ||||| |||| | || || | ||||||||| ||||| |||||||| || Sbjct 561 ATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATACCTTCCTT 502 Query 138519 GTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 ||| ||| |||||| |||| | ||| | || || | | ||||| || | || | Sbjct 501 GTCT-TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGA 443 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || |||||||| || ||||||||||| ||||| Sbjct 442 TAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || || | ||||| || | | | || ||||||||||| |||||||| | Sbjct 860 CCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTGAC 801 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || |||||||| || | | | || || | ||||||||| || || Sbjct 800 AGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGA 741 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| |||||| |||| | ||| | || || | | ||| || Sbjct 740 ATCCCCTCCTTATCT-TGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTCAAC 682 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || |||||||||||||| ||||| Sbjct 681 TTCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCAT 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494323732324560