Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6932 154 1e-32 seq6747 107 2e-18 seq4418 104 2e-17 seq47026 84.2 2e-11 >seq6932 Length=2340 Score = 154 bits (170), Expect = 1e-32 Identities = 400/598 (67%), Gaps = 20/598 (3%) Strand=Plus/Minus Query 22220 GTCGTCGCCGATACGGACGGTTCGCATTTGGCGCCTCTCGCGTACGACTATTTTGA--AA 22277 ||||| || ||||| || || ||||| ||||||| | || || ||| || || Sbjct 1533 GTCGTGGCTGATACTGATGGAAGTCATTTACCGCCTCTGGAATAT-AC-ATTGGGAGAAA 1476 Query 22278 ACAACAAGCGTTTCAAG-ACGCATCCTAATAAAATTGTCGCCGGCTATTTTGTCGAGTGG 22336 | || |||| || ||| | |||| | ||| |||| | || ||| || || || ||| Sbjct 1475 AAAATAAGCCATTTAAGCAAACATCTGGA-AAAGTTGTAGGCGCCTACTTCGTAGAATGG 1417 Query 22337 GGAGTGTACCTTCGCCAGTTTCCCGCCGACAAGGTGCCCGTGCCGAACCTGTCGCATTTG 22396 || || || | | | | || |||| || | || | || || || | |||||| Sbjct 1416 GGTGTCTATCCTAGAAAATTCCCCGTGGATCGTATACCTATACCTAATCTTACTCATTTG 1357 Query 22397 CTCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAACGACGCCCTGAAAACGGTG 22456 ||||| || || | ||||| |||||||| || ||||| || ||| | | ||| | | Sbjct 1356 CTCTATGGCTTTATTCCAATTTGCGGCGGTGATGGCATAAATGACAGCTTAAAAGAGATC 1297 Query 22457 CCGGGAAGCTTCGAGGCGTTGCAACGGTCGTG---CGTCAATAGAGCCGATTTCAAGGTG 22513 || || ||| | || |||| ||||| || || | | ||| || ||||| || Sbjct 1296 GAAGGCAGTTTCCAAGCACTGCAGCGGTCCTGTAGCGGCCGT-GAG--GACTTCAAAGTC 1240 Query 22514 ACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGCGTGTCGTCGTGGAAC 22573 | || |||||||| ||||| || |||||||||| |||||||| |||| ||||||||| Sbjct 1239 TCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTGTCTTCGTGGAAC 1180 Query 22574 GAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAGAGCGAATCCTCATCTC 22633 || || ||||||||||||||||| ||||| ||| || | ||| ||| ||| | | Sbjct 1179 GAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCCCGCCCTGAATTG 1120 Query 22634 AAAGTGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTTTTATCATATGCACGAC 22693 || | | | || || || || |||||| | ||||||| || | | | ||| Sbjct 1119 AAGATTCTTCCCTCTATTGGTGGGTGGACGCTCGCCGATCCTTTCTTCTTTTTAGTTGAC 1060 Query 22694 AAGAACGTGAGACAA----ATTTTCATCGATTCGGTGGAAGAGTATTTGATCACGTGGAA 22749 | || | ||| || |||| | | || || | |||| | | | || ||||| Sbjct 1059 A--AATCTAAGAGAACACGATTT--GTGCAGTCAGTTAAGGAGTTTCTTCTAACATGGAA 1004 Query 22750 GTTCTTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGGGGCGAATCCT 22807 |||||||| || || ||||| ||||||||||| || || || || || || || ||| Sbjct 1003 ATTCTTTGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGTAAAGGTGCTAACCCT 946 >seq6747 Length=1699 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || |||||||| |||||||||||||| || |||||| ||| || Sbjct 885 ACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGACAAAGTGCGACCATCTTCC 944 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | || || ||||| |||| | ||||||||||| || || |||||||| ||||| | Sbjct 945 AATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGG 1004 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||| | | ||| | ||||| | || ||||| | || | ||||| Sbjct 1005 ATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAACGTAATTGTTTTT 1064 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| |||||||| ||||| Sbjct 1065 CCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | ||||| ||||| || | ||||| ||||||||||| ||||| ||| Sbjct 1322 TCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGA 1381 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| || || | || ||||||||| |||| | ||||||||||| || || Sbjct 1382 AAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGG 1441 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||| ||||| |||||| || | | ||| | || || | || || Sbjct 1442 GATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCAC 1501 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || || || ||||| |||||||||||||| Sbjct 1502 TTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | || | || ||||| | ||||| |||||||| || ||||| || Sbjct 410 TCCACCGCGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGA 469 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || | |||||| ||||| |||| | ||||| || || || || Sbjct 470 CAGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGG 529 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| || ||| || ||| | | ||||| ||||| | ||| || Sbjct 530 AATGCCCTCCTTATCTTGGATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCCAC 589 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || || || || ||||| |||||||| Sbjct 590 CTCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 637 >seq4418 Length=3433 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | || |||| || || || | ||||| |||||||||||||| ||||| Sbjct 633 TCCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGA 574 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || | |||||| || ||| | |||| || ||| || || ||||| Sbjct 573 TAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGG 514 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || |||||||| ||| ||| ||| || | | ||| | || || | | || | Sbjct 513 AATACCTTCCTTGTCT-TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 455 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || ||||| ||||| || ||||||||||| ||||| Sbjct 454 CTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | | ||| | || || || | ||||| || |||||||||||||| || Sbjct 861 TCCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTGA 802 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || || |||||||| || | || | | ||| || || || || Sbjct 801 CAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGG 742 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||| || ||| ||| ||| || | | ||| | || || | | ||| | Sbjct 741 AATCCCCTCCTTATCT-TGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTCAA 683 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || ||||| || || |||||||||||||| ||||| Sbjct 682 CTTCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCAT 634 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| |||||||||||||| | || | ||| || || || || || Sbjct 1058 GTAGATTCTTTCTGAATATTGTAATCAGATAATGTTCTTCCATCTTCAAGTTGCTTACCG 999 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 || | ||||||| ||| || || || || ||||| || |||||| ||| ||| || ||| Sbjct 998 GCAAAAATCAATCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCC-TGAATTTTTGCCTT 940 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | ||| | || || | | || ||||| | || | |||||||| ||||| || Sbjct 939 GACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGT 880 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| || ||||| ||||| Sbjct 879 TTTCACGAAAATTTGCAT 862 >seq47026 Length=2159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 114467 CGGCTTCTGTTACATTGGTCGCGGCGACGAAGTCCGCTGCGCCTTTTGCAAGGTCGAAAT 114526 |||||||| |||| | || |||||||| ||||| |||||||| ||||| || || ||||| Sbjct 1961 CGGCTTCTATTACCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAAT 2020 Query 114527 TATGAATTGGAAACGAGGAGACGATCCGCTCGTCGATCACAAGAGATGGGCGCCTCAATG 114586 |||||| ||| || |||||||| | || ||| | || |||||||| || || Sbjct 2021 TATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAAAGGTGGGCGCCCCAGTG 2080 Query 114587 C 114587 | Sbjct 2081 C 2081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473643238293520