Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6932 233 2e-56 seq48588 210 2e-49 seq4418 136 4e-27 seq6747 93.3 4e-14 >seq6932 Length=2340 Score = 233 bits (258), Expect = 2e-56 Identities = 642/971 (66%), Gaps = 27/971 (3%) Strand=Plus/Plus Query 50155 TGTAATCAACTACGCCGTCTTCCCAAGTGCCTGCCGCCGGGCCGGTGGCGATTCCCGTAA 50214 |||||||||| || ||||||| |||||| ||| | || || || ||| | || || | Sbjct 480 TGTAATCAACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGA 539 Query 50215 ACGGATTGTCGTCTTTGTAGCCGGTCACGCCGCGCCAACCCCTGCCGTACATGGCCACGC 50274 | ||| ||| ||||| ||| | ||||| |||||| | || |||||||| || | Sbjct 540 AGGGAATGTTGTCTTCGTAATCATGAACGCCAGTCCAACCACGACCATACATGGCAACAC 599 Query 50275 CTACGATTATTTTGCTCGGCTGCACGTTTTGATCGAG-AAGAACGTTTACCGCAAAATCG 50333 |||| | || || | || | ||| || | | ||| | ||||| | || || Sbjct 600 CTACTACAATCTTCTTAGGATTCACTCCCTGTGCCAACAAGTAT-TTTACTCCGAAGTCA 658 Query 50334 GTCGTGTACTTTTCGTCGGTGTTCCATGCGGGCGCATACAAAGGCGTCTGATGTCCCAAA 50393 | ||||| |||| | || ||||||| ||||| ||||| || || |||||||| | | Sbjct 659 GATGTGTAAGTTTCCTTGGGACTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGA 718 Query 50394 TCGACGGTGGACCAAGCGCCTTTAAAATCGTAACTCATTAAAAATATTTTATCTAAATAA 50453 | | ||||| || || || || || |||||||| || || || | ||| | |||| Sbjct 719 GTATCATTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAA 778 Query 50454 TTTTGAGCGTCGCCGTAATTGACAAGGGCGATTTTATCGTAACCTGCGCTAACGGCGCTC 50513 |||||||| | |||||| | |||| ||||||||| | || | ||||| || Sbjct 779 TTTTGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAA 838 Query 50514 GTCAATTCGAATTCGCGGCCGGTGACGCGTTGA-AGATCGTCCAGCATGTCGCGCAGATC 50572 || |||||| ||| || | | ||| || || || ||||| || || | || Sbjct 839 GTTAATTCGTATTTCTTACCATTCTTA-GCTGAGAGCTCATCGAGCATCTCACGTAATTC 897 Query 50573 GCGAAGCAGCACAACGTACGTGAGT----CCGTCTTTGTGAGGATCGCCGACTGCGGGAT 50628 | || ||| ||| | | || |||| || || | |||| | || | Sbjct 898 TTTCATCA----AACTTACATAACAATCACCATCTTC-TG-GGCTA-CCGAGATCAGGGT 950 Query 50629 TGGCGCCGTTGCCGCCGGGAAACTCCCAATCGATGTCGACGCCGTCGAAAAACTTCCAAG 50688 | || || || || || || |||||||||||||| || || || || || || ||||| | Sbjct 951 TAGCACCTTTACCACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATTTCCATG 1010 Query 50689 TCAGCAGAAACTCGCGTACCGATTCCACAAAAACGGCTCGTTTT-TCCGCGTCGTG-CAT 50746 | || |||||||| || || | |||||| |||| || || | || || Sbjct 1011 TTAGAAGAAACTCCTTAACTGACTGCACAAA------TCGTGTTCTCTTAGATTTGTCAA 1064 Query 50747 GTGAAAA----AATGGATCGGACAACGTCCATCCGCCTATAGACGGTAACACCTTGAGGT 50802 | |||| || ||||||| | |||||| || || ||||| || | | ||| | | Sbjct 1065 CTAAAAAGAAGAAAGGATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATT 1124 Query 50803 GCGGGTTGGCtttttttATCGCCATCAGTTGACCGAAATTTCCTTTGTACGGTTCGTTCC 50862 ||| ||||| ||||| | ||| | ||| || || || |||||||| || ||||||| Sbjct 1125 CAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCC 1184 Query 50863 AAGCCGAGACGCCCTTTTGTGGTTTCTGTACCGCAGCCCACGGGTCGTGAATGGACACTT 50922 | | || | || ||||||||||| |||| || ||||| || ||||| || || |||| Sbjct 1185 ACGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTT 1244 Query 50923 TAAAATCGGCTCGGCCGGCGCACGAACGCTGCAGCGCCTCGAAACTGCCCGTGACGGTTT 50982 | || || | |||||| || || |||||||| || | ||||||||| || || Sbjct 1245 TGAAGTCCTCACGGCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCGATCTCTT 1304 Query 50983 TCAACGCGTCGTTGACGCCTTCGCCGCCGCAAATCGGCACGAAACCGTACAGCAAATGCG 51042 | || ||| || | ||| || ||||||||||| || | || || || |||||||| | Sbjct 1305 TTAAGCTGTCATTTATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATGAG 1364 Query 51043 ACAAATTGGGGGCAGGAATTTTGTCAGCGGCGAACGCACGCGCGTACACTCCCCATTCTA 51102 | ||| || ||| || || ||| ||| | | || || |||||||||| Sbjct 1365 TAAGATTAGGTATAGGTATACGATCCACGGGGAATTTTCTAGGATAGACACCCCATTCTA 1424 Query 51103 CAAAATACGCG 51113 | || || ||| Sbjct 1425 CGAAGTAGGCG 1435 >seq48588 Length=2845 Score = 210 bits (232), Expect = 2e-49 Identities = 661/1020 (65%), Gaps = 8/1020 (1%) Strand=Plus/Minus Query 123313 TAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGG 123372 |||| || ||||| | || | | || || || ||||||| |||| || || Sbjct 1620 TAGAGCCTTGGCATGCGGACATATTTGAGTTCCTAGATTTAAAGAAGAACACAGGTAAGG 1561 Query 123373 AAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGAC 123432 |||||| || ||| | || |||| || || |||||| |||| ||| |||||||| | Sbjct 1560 AAGAAATGAGAGCAAGAGAACTGTTTTATGCCTTATGGATACCAGATCTGTTTATGAAAA 1501 Query 123433 GCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCG 123492 | ||| || | || | | ||| ||||||||||| || ||||| ||| | | Sbjct 1500 GAGTAGAAAAGGATGAAGATTGGAGTCTCATGTGTCCTCATGATTGTCCTGGCCTCGCTG 1441 Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGG 123552 || ||| || | | ||||| || | || || |||| || |||| |||| | Sbjct 1440 ACTGTTATGGAGAGGAATTTGAAGAACTATATGCCAAATATGAA---GAAGAAAAACGGT 1384 Query 123553 TTAGT---CAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAA 123609 ||| || || || | || || | || | ||||| ||| | ||||| || | Sbjct 1383 TTATAAAACAAGTCAGAGCTCAAGAGTTATGGAAGTCAATTATAGAAGCTCAAGTGGAGA 1324 Query 123610 CCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACT 123669 | || || || || ||| | || || || || ||||||||||| | ||||| | || Sbjct 1323 CTGGTACACCATATATGTTATATAAGGATGCTTGCAACAGGAAGAGTAATCAAAAAAATC 1264 Query 123670 TGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATC 123729 | || || || |||||||| ||||||||| | || || | |||||| | ||| Sbjct 1263 TTGGCACTATTAAATGTAGCAATCTTTGCACTGAGGTTGTGCAATACACTTCAGAAGATG 1204 Query 123730 AAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACGGCGCTT 123789 ||||||| ||||| || | ||||| || | || | || ||||| | Sbjct 1203 AAGTGGCAGTGTGCAACCTTGCTTCCATAGCACTTAACAAGTTTGTTGAAAATAATAGAT 1144 Query 123790 TTAATTTCCAAACGCTCAAACGCATAACAAAAACTGT-AGTAAAGAATTTGAACAAAATT 123848 ||||||| ||| | ||| || ||||| | ||| | | || ||||| |||||| | Sbjct 1143 TTAATTTTAAAAAATTAAAAGAAATCACAAAGATTGTGACTCAA-AATTTAAACAAAGTC 1085 Query 123849 ATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCG 123908 || |||||||| ||||||||| | ||||| || ||| ||| ||| |||| Sbjct 1084 ATTGATGTTAACTTTTATCCTGTCCCTGAAGCAAAAACTTCAAATATGAGGCACCGACCT 1025 Query 123909 GTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAA 123968 |||| | || |||| || |||| || | ||||| || || | || || |||||| Sbjct 1024 ATCGGTATTGGTGTTCAGGGTATGGCAGATACATTTGTGTTGATGAGAATACCTTACGAA 965 Query 123969 AGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTG 124028 || || |||||| | |||||| |||||| |||||||||||||| || || || Sbjct 964 AGTGAGAAAGCAATACTCCTTAATCAACAAATATTTGAAACAATTTATTATGGTGCATTA 905 Query 124029 GAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCG 124088 || || || || ||| | || ||| | ||||| ||| | || || || || Sbjct 904 GAAGCTAGTTGTGAATTAGCAGAAAAAGAAGGCGCATACAGCACATATCAAGGAAGTCCA 845 Query 124089 GCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGAC 124148 || |||| |||||| | ||||| || |||||| | || || ||| | | ||| || Sbjct 844 GCTAGCCAAGGTATCCTCCAGTATGATATGTGGGACAAAACTCCTACAGACCTTTGGAAC 785 Query 124149 TGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCG 124208 ||| || | ||| || ||| | | || |||||||| || || || ||| | || Sbjct 784 TGGGCTGTCCTCAAAGAAAAGATAGCAAAACATGGTTTGCGCAATTCTCTATTGATAGCA 725 Query 124209 TACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTC 124268 ||||| || || | ||||| |||||| | || |||| ||||| || || || || Sbjct 724 CCTATGCCAACTGCCTCTACTGCACAAATTCTTGGCAACACTGAATCTTTTGAACCATTT 665 Query 124269 ACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCAT 124328 || ||| | ||| || |||| ||| | || || |||| || | || |||||| Sbjct 664 ACATCAAATATTTACCAAAGAAGAGTCTTATCTGGAGAATTTCCTGTAGTGAACCATCAT 605 >seq4418 Length=3433 Score = 136 bits (150), Expect = 4e-27 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || | || ||| | |||| || |||||||| || |||||||| || Sbjct 407 ATTCCACCCCTAAGACGCAGCACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGTC- 349 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| || | | ||| |||| ||| ||||| ||| | ||||||| ||| ||||| | Sbjct 348 -TGACAGTGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTG 290 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| || |||||||| ||| || | ||| | ||||| || | | Sbjct 289 GAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGATGCTT 230 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| | ||||| |||||||| || || ||||| ||||||||||||||| Sbjct 229 CCACTTCTAAAGTAATAGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCATC 177 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 |||| |||| || ||||||||||| ||||| || || |||| || | | ||| | Sbjct 842 ACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTC--TGACAGTGTGCGTCCATCTT 785 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | |||||||||||| | || | | || ||||| || ||||| || || ||||||| Sbjct 784 CAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCTT 725 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 |||||||| || | ||| | || || |||| ||| ||||| ||||||| || | Sbjct 724 GAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTCAACTTCAAGAGTAATAGTCT 665 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || |||||||||||||||||||| Sbjct 664 TGCCTGTAAGTGTTTTTACAAAAATTTGCAT 634 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || | || |||| |||| || ||||| ||||| ||||||||||| Sbjct 635 ATTCCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCA 576 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| ||||| ||||| || ||| | |||| || || ||||| || Sbjct 575 GATAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGA 516 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || |||||||||||| || | ||||| || || |||| || Sbjct 515 GGAATACCTTCCTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCC 456 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | || ||||| || || || ||||||||||||||||| Sbjct 455 ACTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || | ||| || | || || || || || ||||| || || ||||| ||||| Sbjct 1088 CCACCTCTGAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGAATATTGTAATCAGAT 1029 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| || | ||| || || || | ||||||| || ||||| || ||| Sbjct 1028 AATGTTCTTCCATCTTCAAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGGA 969 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||||||||| || ||||||||| |||| ||||| || || |||| || ||| Sbjct 968 ATGCCTTCTTTGTCCTGAATTTTTGCCTTGACATTTTCTATTGTATCAGAAGCTTCTACT 909 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || | |||||||| || || ||||| || ||||||||||| Sbjct 908 TCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCAT 862 >seq6747 Length=1699 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| |||| ||| || || ||||||||||| || ||||||| Sbjct 1092 ATACCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAAT-- 1149 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | || || | | ||| |||| ||||||||| || | || | | ||| ||||| | Sbjct 1150 CAGATAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTG 1209 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| |||||||| ||||| || ||| || | ||| | ||||| || | | Sbjct 1210 GGGGAATACCTTCTTTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGTT 1269 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | || | ||||| || || ||||| || ||||| || ||||| Sbjct 1270 CTACCTCTAAGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1321 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 || || || || || || || ||||| ||||| |||| | || ||| ||||||| Sbjct 891 TGAAGGGTGGACTCTTTCTGAATATTGTAATC--TGACAAAGTGCGACCATCTTCCAATT 948 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 | || || || | || | || ||||| || || || ||||| ||||| ||||| |||| Sbjct 949 GCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTT 1008 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | || | ||| | ||||| || | || ||||| | |||| ||||| || | Sbjct 1009 TAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAACGTAATTGTTTTTCCAG 1068 Query 45316 TTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 | || ||||| |||||||||||||| ||| || || Sbjct 1069 TAAGTGTTTTAACAAAAATTTGCATACCGCCACGAA 1104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450237432549080