Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6932 228 6e-55 seq6747 113 3e-20 seq4418 96.9 2e-15 >seq6932 Length=2340 Score = 228 bits (252), Expect = 6e-55 Identities = 795/1217 (65%), Gaps = 43/1217 (4%) Strand=Plus/Plus Query 5821 CCAA-ACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCACGCA 5879 |||| ||| ||||||| ||||| | ||||||||||| || ||||| |||||||| ||| Sbjct 248 CCAAGACCCATGTTCATGGCATTCAGTAGATCACCGTTATCAGCGTCGATTTCCCAAGCA 307 Query 5880 AATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGATCG 5939 || | |||||| | || || | ||||| ||||| ||| | | || ||| | | Sbjct 308 AAGAGACCACCTAGTTTGTTATTTCTCACATATTTACCCTTTTCAATAACTGATCTAGCA 367 Query 5940 TTGTCGTACGTAACTAAATCATTATT--ATCGT----AGACGTACGGAGATTGTGCAATG 5993 ||||| || || || | || | | || || |||| || |||| ||| || | Sbjct 368 TTGTCATAGGTTACAAGGTCTCCAGTTGATGGTCTGAAGACATAAGGAGCTTGGGCGACA 427 Query 5994 TTATCATA--GAATTGTACACTTTCGTCGTAC--CT--ATTTACAATATCTTTATAATCG 6047 || || || ||| | ||||| | | | | || ||| |||| || | ||||| Sbjct 428 TTGTCGTAATGAAATTCCCACTTGCCTTGAGCAACTTCATTCGCAATCTCCCTGTAATCA 487 Query 6048 ATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACGGATTA 6107 | || ||| || ||| |||||||| || || | |||| | ||||| || ||| | Sbjct 488 ACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAATG 547 Query 6108 TTGTTTTCG-ACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCTACTAC 6166 |||| |||| | || ||| || || |||| || || |||||||| || ||||||||||| Sbjct 548 TTGTCTTCGTAATC-ATGAACGCCAGTCCAACCACGACCATACATGGCAACACCTACTAC 606 Query 6167 TAATTTAGTCGAATCGACATTTTGATTTAACAA-TCTGTTAATAGCAAAATGGGTTGTGT 6225 | || | | || || || ||||| | | ||| | | || | | ||||| Sbjct 607 AATCTTCTTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTC-CGAAGTCAGATGTGT 665 Query 6226 AATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTTTCCA 6285 || |||| || ||| | ||| ||||| | ||||||||| || | | | || Sbjct 666 AAGTTTCCTTGGGACTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTATCAT 725 Query 6286 TGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCGTTGCG 6345 | ||||| || || || || || || |||| | || |||| ||| | ||| ||| | Sbjct 726 TTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTTTGAG 785 Query 6346 CGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTTAGTT 6405 | | || || ||||| | |||||| || | || | | ||||| ||||| || Sbjct 786 CCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTTAATT 845 Query 6406 GCAATCGTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTTTAAAA 6465 || ||||| |||| | | | | |||||| || ||||| || || | | Sbjct 846 CGTATTTCTTACCATTCTTAGCTGAGAGCTCATCGAGCATCTCACGTAATTCTTTCATCA 905 Query 6466 GTATTGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCACCTTTAC 6525 || ||| | | ||| ||| | | || || ||||| |||||||||| Sbjct 906 AACTTACATAACAATCACCATCTTCTGG---GCTACCGAGATCAGGGTTAGCACCTTTAC 962 Query 6526 CGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCAAAAATT 6585 | || || ||||||||||| || || || || || || |||||||| ||| | ||| | Sbjct 963 CACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATTTCCATGTTAGAAGAAACT 1022 Query 6586 CGCGCACACTATCAACAAA-CGTATTTCGTTTTTCGAC--GTCGTTTAACTGGTAAAACG 6642 | || | ||||| ||| || | || || ||| ||| | | || | Sbjct 1023 CCTTAACTGACTGCACAAATCGTGTTC---TCTTAGATTTGTCAACTAAAAAGAAGAAAG 1079 Query 6643 GATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTGGCGCT 6702 ||||| |||||||| || || || || || | || | || || || | || ||| Sbjct 1080 GATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGG---GCGG-GCT 1135 Query 6703 TGATC----GCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTCGACA 6758 || | | |||||| || |||||||| |||||||| || ||||| | | |||| Sbjct 1136 TGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCACGAA--GACA 1193 Query 6759 --CCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATCTT 6816 ||||||||||||||||| | ||| ||||| ||| || || | |||||||| || | Sbjct 1194 ATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCT 1253 Query 6817 TTCGGCCGGCGCACGATTTTTGCAACGCCTC-AAACGAACTGGGTATTTGTTGTTTAAGC 6875 |||||| || || |||| || | |||| || | || | || |||||| Sbjct 1254 CACGGCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCG-ATCTCTT--TTAAGC 1310 Query 6876 GCATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAAGA 6935 || |||| ||||| ||||| |||||||| ||||| || || | |||||| |||||| Sbjct 1311 TG-TCATTTATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATGAGTAAGA 1369 Query 6936 TTAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAAAG 6995 ||||| || || || || |||| ||| |||| || ||||||||||| || ||| Sbjct 1370 TTAGGTATAGGTATACGATCCACGGGGAATTTTCTAGGATAGACACCCCATTCTACGAAG 1429 Query 6996 TAAGCGCCCACAACATT 7012 || ||||| ||||| || Sbjct 1430 TAGGCGCCTACAACTTT 1446 >seq6747 Length=1699 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| ||| |||||||| || | ||| ||||| || ||||| ||||| | | Sbjct 867 CCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGAC 926 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| |||||||| || || |||| || | |||||||||||| | || Sbjct 927 AAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 986 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| |||||||| ||||| || | | | | |||||| | | ||| || Sbjct 987 ATGCCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACT 1046 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||||||||| || || | ||||| || || || ||||| Sbjct 1047 TCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||| ||||||||||| ||||||||| || || || || | | Sbjct 411 CCACCGCGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGAC 470 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| ||||| ||||| || |||| || | |||||| || || | ||| Sbjct 471 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 530 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||| || || || || ||| ||| || ||| || ||||| | |||| Sbjct 531 ATGCCCTCCTTATCTTGGATCTTTGCCTTAACATTTTCGATA--GTGTCGGATGGCTCCA 588 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || ||||| || || | || || || ||||||||||| Sbjct 589 CCTCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 637 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||| || | ||| ||||||||| || || || |||| Sbjct 1323 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAA 1382 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| | || |||||||| || || | || || | |||||||||||| | || Sbjct 1383 AGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGG 1442 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| |||||||| ||||| ||| | | | | || || | | |||||| Sbjct 1443 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1502 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||||| || || || |||| ||||| || || |||||||| Sbjct 1503 TCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||| | |||||| ||||||||| ||||| || ||||| || || | Sbjct 639 CCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 698 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| |||| || || || ||||||||| ||| || ||||| | ||| Sbjct 699 AGAGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGGGGA 758 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| ||| || ||||| | | | ||||||| |||||| Sbjct 759 ATACCCTCCTTGTCTTGTATCTTGGCTTTAACATTTTCAATAGTGTCTGATGGTTCCACT 818 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || ||||| || || | || ||||| ||||||||||| Sbjct 819 TCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 >seq4418 Length=3433 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 |||||| || || |||||||| ||||||||| ||||||||||| | | | |||| | Sbjct 621 ACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGATAGAGTGCGTCC 562 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| ||||| ||||| ||| | ||||| | | ||| || || | || | ||||| || Sbjct 561 ATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATACCTTCCTT 502 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 ||| |||||| |||| | ||| ||| || | |||||| ||||| || || Sbjct 501 GTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAATGTGAT 442 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || | || ||||| || || ||||| Sbjct 441 AGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346046512940459