Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq48588 134 2e-26 >seq48588 Length=2845 Score = 134 bits (148), Expect = 2e-26 Identities = 901/1438 (63%), Gaps = 57/1438 (4%) Strand=Plus/Minus Query 111605 GGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGA 111664 ||||| || || ||||| | ||| | ||| | || || || ||||| ||||| ||||| Sbjct 2030 GGAAAGACCTCAACACATGCTTATGAGAGTCTCCATAGGCATTCATGGTGAAGACATTGA 1971 Query 111665 TTCTGTTTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAA 111723 | || | | || || | | |||||| | ||| || | || |||| || | Sbjct 1970 TAGTGCAATCAATACTTATAATATGATGTCAGAGAAATATTTT-ACACATGCAAGCCCTA 1912 Query 111724 CCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACA 111783 | || ||| || | |||||| || || || | ||| ||| |||||||| || | | Sbjct 1911 CACTGTTCTCAGCAGCTACACCGAGGCCACAGCTTTCCTCTTGCTTCCTTATAGCTATGA 1852 Query 111784 AGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGT 111843 | || ||| || | || |||| | ||| | | ||||||| ||| || || | Sbjct 1851 AAGACGATAGTATTGAAGGTATTTTTGATACTTTAAAACAATGTGCATTAATTTCTAAAT 1792 Query 111844 GGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAG 111903 || ||||| || || | || | ||| |||||||| | |||| ||| | Sbjct 1791 CTGCCGGTGGCATAGGTTTACATACACATTGCATCAGAGCCCAGGGGTCTTATATAGCTG 1732 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 |||| ||||| ||| ||||| | | |||||| | | || | ||| || || Sbjct 1731 GTACTAATGGGGTTTCAAATGGTCTAGTGCCAATGTTGAGAGTGTACAACAATACTGCCA 1672 Query 111964 GCTATGTAAACCAAGCTGGG------CGTCGCAAGGGATCTATCGCAGTCTATCTTGAGC 112017 | |||||| | |||| ||| |||| | | || | ||| | || | |||| Sbjct 1671 GATATGTAGATCAAGGTGGAAACAAACGTCCCGGTGCATTT---GCAATTTACTTAGAGC 1615 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 | ||||| ||||| || | |||||||| || || ||| |||| | || || Sbjct 1614 CTTGGCATGCGGACATATTTGAGTTCCTAGATTTAAAGAAGAACACAGGTAAGGAAGAAA 1555 Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137 | | | || || || | || | ||||| |||||||| || ||||| ||||| | Sbjct 1554 TGAGAGCAAGAGAACTGTTTTATGCCTTATGGATACCAGATCTGTTTATGAAAAGAGTAG 1495 Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCC 112196 | || || ||||| |||| | ||||| | | || || ||| | || || Sbjct 1494 AAAAGGATGAAGATTGGAGTCTCATGTGTCCTCATGATTGTCCTGGCCTCGCTGACTGTT 1435 Query 112197 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG 112256 ||| ||||| ||||||| || || | || || || ||||||| ||| | | Sbjct 1434 ATGGA-GAGGAATTTGAAGAACTATATGCCAAATATGAAGAAGAAAAACGGTTTA-TAAA 1377 Query 112257 ACG-GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 || || |||| || | ||||| | ||| | | ||||| ||||||||||| Sbjct 1376 ACAAGTCAGAGCTCAAGAGTTATGGAAGTCAATTATAGAAGCTCAAGTGGAGACTGGTAC 1317 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 |||||||||| | || || || || || ||| |||||||||||||| ||| | || Sbjct 1316 ACCATATATGTTATATAAGGATGCTTGCAACAGGAAGAGTAATCAAAAAAATCTTGGCAC 1257 Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 112435 || || || ||| || || || || | || ||| || ||||||| ||| Sbjct 1256 TATTAAATGTAGCAATCTTTGCACTGAGGTTGTGCAATACACTTCAGAAGATGAAGTGGC 1197 Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATT 112495 ||||| ||||| || || || || || ||||| ||| || | || | ||| Sbjct 1196 AGTGTGCAACCTTGCTTCCATAGCACTTAACAAGTTTGT------TGAAAATAATAGATT 1143 Query 112496 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 | ||| | ||||| | | ||| | || || | ||| || |||| |||||| ||| || Sbjct 1142 TAATTTTAAAAAATTAAAAGAAATCACAAAGATTGTGACTCAAAATTTAAACAAAGTCAT 1083 Query 112556 TGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612 |||| || ||||| || || ||| || | || |||||||| ||||| || Sbjct 1082 TGATGTTAACTTTTATCCTGTCCCTGA---AGCAAAAACTTCAAATATGAGGCACCGACC 1026 Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA 112672 || ||| | ||||| || ||| | || ||| ||| | ||| | | | | Sbjct 1025 TATCGGTATTGGTGTTCAGGGTATGGCAGATACATT-----TGTGTTGATGAG-AATACC 972 Query 112673 TTCCGACGAAGCGAAGGAAATCAATGCGCGT----------ATATTTGAGACAATGTATC 112722 || ||| ||| || |||| |||| | | | |||||||| ||||| ||| Sbjct 971 TTACGA--AAGTGA--GAAAGCAATACTCCTTAATCAACAAATATTTGAAACAATTTATT 916 Query 112723 ACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 112782 | | || | || || |||| || || ||||| || || |||| || | | Sbjct 915 ATGGTGCATTAGAAGCTAGTTGTGAATTAGCAGAAAAAGAAGGCGCATACAGCACATATC 856 Query 112783 AGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG---AAGGTGAGACCA 112839 | || ||||||| ||||| | || || | ||||||||||| || | || Sbjct 855 AAGGAAGTCCAGCTAGCCAAGGTATCCTCCAGTATGATATGTGGGACAAAACTCCTACAG 796 Query 112840 AGCTTCACTACGACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAA 112897 | ||| | |||||| | ||||| ||| || ||| | | ||| | || || Sbjct 795 ACCTT---TGGAACTGGGCTGTCCTCAAAGAAAAGATAGCAA--AACATGGTTTGCGCAA 741 Query 112898 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 112957 ||| ||||| ||||| |||||||| ||||| || |||||||| | || || | ||| Sbjct 740 TTCTCTATTGATAGCACCTATGCCAACTGCCTCTACTGCACAAATTCTTGGCAACACTGA 681 Query 112958 ATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT 113015 || |||||||| | || | || || || | |||||| | | | ||||| ||| Sbjct 680 ATCTTTTGAACCATTTACATCAAATATTTACCAAAGAAGAGTCTTATCTGGAGAATTT 623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618317446536560