Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4418 187 6e-42 seq6747 150 4e-31 seq115306 89.7 1e-12 >seq4418 Length=3433 Score = 187 bits (206), Expect = 6e-42 Identities = 175/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | |||||||||||| || || ||||| |||||||||||||| | | || Sbjct 1083 TCTGAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGAATATTGTAATCAGATAATGT 1024 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || |||||||| || || || | || ||||||||||| |||||||| Sbjct 1023 TCTTCCATCTTCAAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGGAATGCC 964 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| ||||||||| |||||| || || || || || ||| ||| ||||| | Sbjct 963 TTCTTTGTCCTGAATTTTTGCCTTGACATTTTCTATTGTATCAGAAGCTTCTACTTCCAA 904 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || || |||| ||||| ||||| | ||||||| Sbjct 903 TGTGATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCATT 861 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 || || | || ||| | ||| | ||| || |||||||||||||| ||||| | ||||| Sbjct 626 CTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGATAGAGTG 567 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| | ||| || || ||||| || |||| ||||||||||||||||| ||| Sbjct 566 CGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATACCT 507 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || ||||||||||||||| ||| || || || || || || ||| ||||||||| | Sbjct 506 TCCTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAT 447 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | ||||| || |||| || ||||| || | ||||||| Sbjct 446 GTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 405 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || |||||||||||||| || | || || | |||||||| || || || ||| Sbjct 830 GTAGATTCCTTTTGAATATTGTAGTCTGACAGTGTGCGTCCATCTTCAAGTTGTTTTCCT 771 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || ||||| | ||||||||||| ||||| || || || |||||||||||| ||| Sbjct 770 GCAAAAATAAGCCTCTGTTGGTCTGGGGGAATCCCCTCCTTATCTTGAATTTTTGCCTTA 711 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| || || ||| || |||||||| |||| ||||| ||||| | ||| Sbjct 710 ACATTTTCAATTGTATCAGAAGGCTCAACTTCAAGAGTAATAGTCTTGCCTGTAAGTGTT 651 Query 195124 TTTACGAACACTTGCATT 195141 ||||| || | ||||||| Sbjct 650 TTTACAAAAATTTGCATT 633 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||| || || || |||||||| || || | || || | |||||||| || || Sbjct 381 GTGCAAAGTCGATTCCTTCTGAATATTATAGTCTGACAGTGTGCGTCCATCTTCCAGTTG 322 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || | || |||||||||||||||||||||||| ||||||||||| || Sbjct 321 CTTTCCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTGTCTTGAATCTT 262 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| || || || || ||||| || ||||||||| | |||| || || || || Sbjct 261 TGCCTTAACATTTTCGATTGTGTCAGATGCTTCCACTTCTAAAGTAATAGTTTTGCCAGT 202 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || | |||||| Sbjct 201 CAGTGTTTTAACAAAAATTTGCAT 178 Score = 102 bits (112), Expect = 2e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || | ||| | ||| || || || ||||||||||| || | || || Sbjct 171 TCTCAGACGCAGTACCAAGTGCAAAGTCGATTCCTTCTGAATATTGTAGTCAGATAGTGT 112 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || || || || | ||| || ||||| |||||||| Sbjct 111 GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATTAGCCTTTGCTGATCTGGGGGAATGCC 52 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAA 195084 ||||| || |||||||| ||| || || ||||| || || ||| Sbjct 51 CTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAA 6 >seq6747 Length=1699 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||||||||| || ||||||||||| ||||| |||| |||||| | || || Sbjct 1337 CAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTC 1396 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||| || ||||||||||| || || || || || || ||||| |||||||| Sbjct 1397 TTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCTTTGTC 1456 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| ||||| || || || ||||| || || || ||||||||| || |||| || Sbjct 1457 TTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTAATGGT 1516 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| || | ||||| || || | ||||| Sbjct 1517 CTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||||||||| |||||||||||||| | | ||| | |||||||| | || Sbjct 890 GTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGACAAAGTGCGACCATCTTCCAATTG 949 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || |||||||| || || || || || || ||||| ||||||||||| ||||| Sbjct 950 CTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTT 1009 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || ||||| ||||| || ||| ||||| | |||| || ||||| || Sbjct 1010 AGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAACGTAATTGTTTTTCCAGT 1069 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | |||||| Sbjct 1070 AAGTGTTTTAACAAAAATTTGCAT 1093 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| || || |||||||| || ||||| | || || | |||||||| || || Sbjct 1119 TGTAGAGTAGATTCCTTTTGAATGTTATAATCAGATAGTGTACGGCCATCTTCCAGTTGT 1178 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || || | |||||||||||| ||||| |||||||||||||| || ||| Sbjct 1179 TTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGAATACCTTCTTTGTCTTGGATCTTT 1238 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||| ||||| |||||||| ||| || || | ||| | || |||||||| Sbjct 1239 GCCTTCACGTTTTCAATAGTGTCCGATGGTTCTACCTCTAAGGTGATGGTTTTTCCTGTA 1298 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||| || || || | |||||| Sbjct 1299 AGAGTCTTAACAAAGATCTGCATT 1322 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| | |||||||||||| ||||||||||| || | ||||| | ||||| Sbjct 654 AATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAGAGAGTACGACCATCC 713 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || ||||||||||| || || || || |||||||| ||||| ||||| || || |||||| Sbjct 714 TCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGGGGAATACCCTCCTTGTCT 773 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || || || || || ||||| ||||| || ||||||||| | || | || Sbjct 774 TGTATCTTGGCTTTAACATTTTCAATAGTGTCTGATGGTTCCACTTCTAATGTGATAGTT 833 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| | || ||||| || | ||||| Sbjct 834 TTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 Score = 116 bits (128), Expect = 8e-21 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || |||||||| || ||||| || | ||| || | |||||||| | ||||| || Sbjct 1580 AGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGTACGACCATCTTCTAATTGCTTGCC 1639 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| Sbjct 1640 CGCGAAAATAAGACGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTT 1693 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || |||||||| || ||||| || | ||||| | ||||| || | ||| ||||| Sbjct 440 AGTAGATTCTTTTTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAACTGTTTACC 499 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| || || ||||||||||| |||||||| || || ||||| || ||| ||| Sbjct 500 AGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTTGCCTT 559 Query 195063 GACGTTCTCAATGGTGTCCGA 195083 || || || || ||||| || Sbjct 560 AACATTTTCGATAGTGTCGGA 580 >seq115306 Length=588 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 || |||||||||||||| || ||||||||||| || || |||||| ||||| || ||| Sbjct 178 TGCTGGTCTGGAGGAATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTCTCGATAGTG 119 Query 195079 TCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGC 195138 ||||| || || |||||||| | ||||| || || | ||||| ||||| | ||| Sbjct 118 TCCGAGGGCTCGACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAAATCTGC 59 Query 195139 AT 195140 || Sbjct 58 AT 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1105039012737141