Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq48588 533 2e-146 seq94046 134 2e-26 seq111536 127 2e-24 seq94045 93.3 5e-14 >seq48588 Length=2845 Score = 533 bits (590), Expect = 2e-146 Identities = 1192/1789 (67%), Gaps = 45/1789 (3%) Strand=Plus/Plus Query 46972 CTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATAC 47031 |||| || |||||||||| ||| | ||| |||| |||||| ||||| || ||||| | Sbjct 262 CTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAGTACATTC 321 Query 47032 CAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAG 47091 | || |||||||| | |||| | | |||||| || |||| ||| ||| ||| Sbjct 322 CTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCATAGTTAG 381 Query 47092 GTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTG 47151 ||| | || ||| || || | ||||||||| || || ||||| || ||||||||||| | Sbjct 382 GTTTAGCAACATGTATGTTGAAAGATTGACTTTGGTCTATAAACGCTCCTCTATCAGCGG 441 Query 47152 CCATATCTAAAATAACCCTTT--GTGGTATCTCCCATACTGTTTTATAAATTTGTTTAAT 47209 |||| | || || ||| ||| ||||||||||| ||||| || | | | | || Sbjct 442 CCATCTGTATGG--ACGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATCTCTTAT 499 Query 47210 GTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataattttgttttt 47266 |||| |||| || | | | ||| |||||||| ||| | |||||| ||||| Sbjct 500 TTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAGATTTTT 559 Query 47267 taattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAAT 47326 | || | ||| | | ||| || | | ||||||| | || || | Sbjct 560 CATATCTTCATCCCATAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGTTCACTAC 619 Query 47327 TTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386 ||||||||||||||| ||||| | || ||||| |||| ||||||| | ||| Sbjct 620 AGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAATGGTTCAAAAGA 679 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 |||| | || |||| |||||| ||||| || || || ||||| | ||| | |||| Sbjct 680 TTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTTGGCATAGGTGCTATCAATAGAGA 739 Query 47447 ATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGA 47506 ||| | | |||| |||| ||||| ||| | |||||| |||| Sbjct 740 ATTGCGCAAACCATGTTTTGCTATCTTTTCTTTGAGGACAGCCCAGTTCCAAAGGTCTGT 799 Query 47507 TGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATA 47566 ||| | ||| | |||||| || || || |||| || ||| || | ||| Sbjct 800 AGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTAGCTGGACTTCCTTGATA 859 Query 47567 TGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATA 47626 ||| | || | || | | || || | ||||||||| ||||| ||||||| |||||| Sbjct 860 TGTGCTGTATGCGCCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCACCATAATA 919 Query 47627 TATTGTTTCAAATATTTTTATGTTTA--GATTCCTTGCTT-CTGATGATTCAAAAGGATA 47683 |||||||||||||||| | || ||| || | |||||| || | ||| |||| Sbjct 920 AATTGTTTCAAATATTTGT-TGATTAAGGAGTA-TTGCTTTCTCACT-TTCGTAAGGTAT 976 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 ||||||||||||| || |||||||||||||| || |||| || | Sbjct 977 TCTCATCAACACAAATGTATCTGCCATACCCTGAACACCAATACCGATAGGTCGGTGCCT 1036 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 |||| ||| | ||||| || | ||||| ||| | ||| || | ||| |||| Sbjct 1037 CATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTGTTTAA 1096 Query 47804 ANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTAT 47863 | |||||| ||||||| ||||||| ||| | |||||| Sbjct 1097 ATTTTGAGTCACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTATTATTTTC 1156 Query 47864 AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923 ||||||| | ||||||||||| || || || || || || || || |||| | ||| Sbjct 1157 AACAAACTTGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGT 1216 Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983 ||||| | | |||| || ||||| | |||||| ||||| || | ||||| ||||| Sbjct 1217 GTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATT 1276 Query 47984 ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043 | | |||| || || ||||| || | |||| | ||||| ||||| || | |||| Sbjct 1277 ACTCTTCCTGTTGCAAGCATCCTTATATAACATATATGGTGTACCAGTCTCCACTTGAGC 1336 Query 48044 TTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCTTTATTA---- 48098 ||| || || || ||||| | | || | ||| | | || | ||||| | Sbjct 1337 TTCTATAATTGACTTCCATA-ACTCTTGAGCTCTGA--------CTTGTTTTATAAACCG 1387 Query 48099 ----TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATT-ATCTA 48153 || | ||| ||||| | ||||| | |||||||| || ||||| ||| | | | | Sbjct 1388 TTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCATA-ACAGTCAGCGA 1446 Query 48154 ACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCA 48213 |||||||| |||| ||||||||| | |||||| ||||| |||| |||||| ||| Sbjct 1447 GGCCAGGACAATCATGAGGACACATGAGACTCCAATCTTCATCCTTTTCTACTCTTTTCA 1506 Query 48214 TAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGC 48273 |||| | |||||||||||| | || ||| | || || | ||| | |||||| || | Sbjct 1507 TAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTTGCTCTCATTTCTTCCTTAC 1566 Query 48274 CACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATA 48333 | | ||| | || | || || || || | ||| || |||||||| || ||||| || | Sbjct 1567 CTGTGTTCTTCTTTAAATCTAGGAACTCAAATATGTCCGCATGCCAAGGCTCTAAGTAAA 1626 Query 48334 TTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTAT 48393 |||| | | |||| || ||||| || || |||||||||| |||||||||||||||||| | Sbjct 1627 TTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTGT 1686 Query 48394 AAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTC 48453 | ||||| |||||||| || | ||||||||| | ||||| || || | |||||| | Sbjct 1687 ACACTCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGTACCAGCTATATAAGACC 1746 Query 48454 CACTAGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 | ||||| || || || || || |||||| ||||| || |||||| |||| Sbjct 1747 CCTGGGCTCTGATGCAATGTGTA--TGTAA-ACCTATGCCACCGGCAGATTTAGAAATTA 1803 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| |||| | |||||| |||| ||||| |||||||| ||| ||||| || | Sbjct 1804 ATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATACTATCGTCTTTCATAGCTATAA 1863 Query 48571 GAAAACAACTAGACATTTGCGG---ATGACAAGTTCCTGAATTAAATAATGTTGGAGATG 48627 | || ||| || | || || | || | |||| || | ||| || || Sbjct 1864 GGAAGCAAGAGGAAAGCTGTGGCCTCGGTGTAGCTGCTGA---GAACAGTGTAGGGCTTG 1920 Query 48628 CATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCC 48687 |||| |||| |||||||||| | || ||||| || | || || ||| || || Sbjct 1921 CATGTGTAAAATATTTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTT 1980 Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 ||| || ||||| || || | ||| | ||| | |||||||||||| Sbjct 1981 CACCATGAATGCCTATGGAGACTCTCATAAGCATGTGTTGAGGTCTTTC 2029 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48744 TTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803 || || ||||| || || | ||||||| ||||||| |||||||||||||||||||||||| Sbjct 2254 TTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 2313 Query 48804 GAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTT 48853 ||| || |||||| || ||| | || | || | | ||||| | ||| Sbjct 2314 TTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2363 >seq94046 Length=398 Score = 134 bits (148), Expect = 2e-26 Identities = 162/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||| | | ||||| || || |||||| |||||| |||||||||| |||||| ||||| Sbjct 141 ATCTCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGC 200 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343 || ||||| || || || || || ||||| || | || || || | || | || Sbjct 201 AATTTGAAAACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAGAAACGCTC 260 Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAAT 19403 ||||| || |||||||| || |||||| ||| ||||| || ||||| |||||||| || Sbjct 261 CACCAAGTTCTCATTAACAATACCATCAGAAGCCGCAAAGAAGGCTAAGACATGTTTGAT 320 Query 19404 AAAATGTTTTTC---ATCTGAGGTTAATGTATTCCAATC 19439 ||||||||| || |||| ||||||| | |||||| Sbjct 321 AAAATGTTTCTCGCAATCT---TTTAATGTCTCCCAATC 356 >seq111536 Length=3730 Score = 127 bits (140), Expect = 2e-24 Identities = 248/364 (68%), Gaps = 7/364 (2%) Strand=Plus/Plus Query 136634 ATGACTCC--TATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTA 136691 |||||||| ||||| || ||||| || ||| | || | || || || | || | | Sbjct 2909 ATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTATGA 2966 Query 136692 AAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTC 136751 |||| | ||||||||| || ||| | || ||||||||||| |||||||| || || |||| Sbjct 2967 AAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGTTC 3026 Query 136752 ACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATA 136811 | || || ||||| | || || |||| | | | ||||| |||| || | Sbjct 3027 ATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCACA 3086 Query 136812 AAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTTATTT 136871 ||||| | || |||| || ||| |||||||||| ||| || | | | | | |||| Sbjct 3087 AAGTTAGTCATTTTAAAGATTATTTACCTAAAGCATTTCCTAAAGGAGCTGATTTGATTT 3146 Query 136872 TAGATTCAGAAATAGTACTAGTAGATAAAAATAAT---AAACCATTACCATTTGGCAGTT 136928 | ||| | ||| || | | || ||| |||| | |||||||| || ||||| | | Sbjct 3147 TGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTTGGTACAT 3206 Query 136929 TGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATT 136988 | ||||| || ||| | |||| ||| ||| | | | ||||||| | ||||||||| Sbjct 3207 TAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGATT 3266 Query 136989 GTTT 136992 | || Sbjct 3267 GCTT 3270 >seq94045 Length=338 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/103 (81%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 ||||| ||| ||||| ||||||||||| | |||||||| || || || |||||||||| Sbjct 314 TAATACCTTG-GATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTAT 256 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||| | |||||| || ||||||| || || |||||||| || Sbjct 255 ACATCTGCCATATGTCCGGATATTGGATTGGGAATATAACGAA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559912900893720