Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq6932 365 4e-96 seq6747 174 1e-38 seq4418 163 2e-35 seq173230 86.0 5e-12 >seq6932 Length=2340 Score = 365 bits (404), Expect = 4e-96 Identities = 729/1066 (68%), Gaps = 17/1066 (2%) Strand=Plus/Plus Query 42464 AATCTGTCTATAGTCTACGACGCCATCTTCCCAAGTACCCGAAACTGGACCTGTCGCAAT 42523 ||||| || || || || || || |||| ||||||||| || || || || || | Sbjct 472 AATCTCCCTGTAATCAACCACTCCGTCTTGCCAAGTACCTTTGACAGGTCCAGTAGCGTT 531 Query 42524 ACCCGTGAAGGGATTATTGTTTTGGTAATTGCTTACTCCGGTCCAACCTCGTCCGTACAT 42583 || ||||||||| | |||| || ||||| || || |||||||| || || ||||| Sbjct 532 GCCTGTGAAGGGAATGTTGTCTTCGTAATCATGAACGCCAGTCCAACCACGACCATACAT 591 Query 42584 GGCCACGCCTAAAATTATTTTTTGAGGTTTCACTTTTTGTTTCAA-AAGCGTTTGAACGG 42642 ||| || |||| | || || | ||| |||||| ||| ||| ||| ||| | | Sbjct 592 GGCAACACCTACTACAATCTTCTTAGGATTCACTCCCTGTGCCAACAAGTATTTTA-CTC 650 Query 42643 CATAATCTGCCGTGTAATGTTCGTTTTCGTTCCATTCGGGAGCATACAGATTTGTTTGAT 42702 | | || | |||||| ||| || ||||| | || || |||| |||||||| Sbjct 651 CGAAGTCAGATGTGTAAGTTTCCTTGGGACTCCATGCAGGCGCGTACAATGGTGTTTGAT 710 Query 42703 GGCCCAAATCTGAATTTGACCAAGCACCTTTAAAGTCATAGCTCATTAAAAATATTTTAT 42762 | || | | ||||||||| || || || |||||||| ||||| || || || | || Sbjct 711 GTCCAAGAGTATCATTTGACCAGGCTCCCTTGAAGTCATAACTCATCAAGAAAATATGAT 770 Query 42763 CCAAATAGTTTTGAGCATCGTTGTAATCGACAATAGCGATTTTGTCGTCTCCCGCACTAA 42822 ||| ||| |||||||| | | ||| || |||| |||||| || ||| | |||| Sbjct 771 CCATATAATTTTGAGCCTTGCCGTAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAA 830 Query 42823 TTGCGCTAGTCAATTCGTATTTGCGATTAGTTTCGTTTTCT---AGTTCGTCCAGCATGT 42879 | || ||| ||||||||||| | | ||| || || || || || ||||| | Sbjct 831 TAGCAGAAGTTAATTCGTATTTCTTACCA--TTC-TTAGCTGAGAGCTCATCGAGCATCT 887 Query 42880 CGCGCAATTCTCGTAACAAAACTACATACGTAAGACCGTCATTTTGAGGATCTCCAATTG 42939 | || |||||| | |||| |||||| | ||| || || || || | | | | Sbjct 888 CACGTAATTCTTTCATCAAACTTACATAACAATCACCATC-TTCTG-GGCTACCGAGATC 945 Query 42940 TCGGATTAGCTCCTTTACCACCGGGAAATTCCCAATCAATATCGACGCCGTCAAAAAATT 42999 || ||||| ||||||||||| || || |||||||| ||||| || || ||||| |||| Sbjct 946 AGGG-TTAGCACCTTTACCACCAGGGAACTCCCAATCGATATCAACACCATCAAAGAATT 1004 Query 43000 TCCAAGTGAGCAAAAACTCACGTACTGAATCCACAAATATTTTACGCTTG--TTTGCATC 43057 |||| || || | |||||| ||||| | ||||||| | | | ||| |||| || Sbjct 1005 TCCATGTTAGAAGAAACTCCTTAACTGACTGCACAAATCGTGTTCTCTTAGATTTG--TC 1062 Query 43058 GCTGAAAAAATAAAACGGGTCGGACAATGTCCATCCACCTATCGAAGGTAACACTTTAAG 43117 ||||| | || || |||| | ||||| ||||| || || || | | || | Sbjct 1063 AACTAAAAAGAAGAAAGGATCGGCGAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAA 1122 Query 43118 ATGAGGGTTAGCTTTTTTGGCTGCCATTAATTGACCAAAGTTGCCTTTGTACGGTTCATT 43177 | |||| |||| ||| || ||||||||| ||||||||||||||||| || || || Sbjct 1123 TTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTT 1182 Query 43178 CCACGAGGAAACACCTTTTTGTGGTTTCTGTATAGCCGCCCACGGATCGTGTATGGAAAC 43237 |||||| || | |||||||||||||| |||| || ||||| |||||||| || || || Sbjct 1183 CCACGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGAC 1242 Query 43238 TTTGAAGTCGCTTCGACCCGCACAAGATTTTTGAAGAGCTTCAAAACTGCCAGGAATAGA 43297 ||||||||| || || ||| || || || |||| |||||||| || Sbjct 1243 TTTGAAGTCCTCACGGCCGCTACAGGACCGCTGCAGTGCTTGGAAACTGCCTTCGATCTC 1302 Query 43298 TTTTAAACTGTCATTAATGCCGTCACCGCCGCATATCGGAATAAATCCGTACAACAAATG 43357 |||||| |||||||| ||||| ||||||||||| || |||||||| || || | |||||| Sbjct 1303 TTTTAAGCTGTCATTTATGCCATCACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATG 1362 Query 43358 AGACAAATTGGGTAAAGGCACTTTGTTGACAGGAAATGAACGACCGTATACGCCCCATTC 43417 || | ||| |||| ||| | | || || ||| | | || || |||||||| Sbjct 1363 AGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTTCTAGGATAGACACCCCATTC 1422 Query 43418 TACAAAATAAGCGGCCACGGCTTTATC-GGTGCCCAATTCGAAAGGTTTATTGTTTTCTT 43476 ||| || || ||| | || |||| | | || || || || ||||| |||||| Sbjct 1423 TACGAAGTAGGCGCCTACAACTTTTCCAGATGTTTGCTT-AAATGGCTTATTTTTTTCTC 1481 Query 43477 GCCATGTATATGGCAAAGGATCTAAATGCGAACCGTCCGTATCAGC 43522 | |||||||| || ||| |||||| || || |||||||| Sbjct 1482 CCAATGTATATTCCAGAGGCGGTAAATGACTTCCATCAGTATCAGC 1527 >seq6747 Length=1699 Score = 174 bits (192), Expect = 1e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| || || || ||||| |||||||||||||| || ||||| |||| Sbjct 1321 TTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGG 1380 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | | || ||||||||||| || || || || | |||||| ||||| |||| Sbjct 1381 AAAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCG 1440 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||| ||||| ||||| ||||| ||||||| |||| | ||| ||||| | ||||| Sbjct 1441 GGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCA 1500 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| ||||| | || || || |||| ||||| ||||| |||||||| Sbjct 1501 CTTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| | || || |||||||| || ||||| || ||||||||||| | Sbjct 867 CCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGAC 926 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||||||||| ||||| || | |||||| ||||| || || Sbjct 927 AAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 986 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| ||||| ||||| ||||| |||||| |||| | |||||||| | ||| ||| Sbjct 987 ATGCCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACT 1046 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 1047 TCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| | |||||||||||||| || ||||| || | | ||| | | |||| ||| Sbjct 429 ACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCC 488 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || || ||||| ||||| || | ||||||||| || || |||||||| || |||||||| Sbjct 489 AACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGG 548 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || ||| |||| | |||||| || | ||||| || | ||||| ||||| Sbjct 549 ATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATAGTTTTC 608 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 609 CCAGTAAGTGTCTTAACAAAGATCTGCAT 637 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||||||| | |||||||| | |||||||||||||| || ||||| || | Sbjct 1551 CCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAA 1610 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || |||||||| || || || || | ||| |||||||| || ||| Sbjct 1611 AGTGTACGACCATCTTCTAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGAGGA 1670 Query 101363 ATGCCTTCTTTATCTTGAATTTT 101385 ||||||||||| ||||| ||||| Sbjct 1671 ATGCCTTCTTTGTCTTGGATTTT 1693 >seq4418 Length=3433 Score = 163 bits (180), Expect = 2e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||||||||| || ||||||||||| | | ||||| |||| || | |||| Sbjct 1064 TGAAGGGTAGATTCTTTCTGAATATTGTAATCAGATAATGTTCTTCCATCTTCAAGTTGC 1005 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| ||||| | |||||| || || |||||||||||||| || ||||||||| Sbjct 1004 TTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCCTGAATTTTT 945 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||||| || ||||| | ||| ||||| | |||| |||||||| || Sbjct 944 GCCTTGACATTTTCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTC 885 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || || ||||| Sbjct 884 AGCGTTTTCACGAAAATTTGCAT 862 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || |||| ||| | |||||| || | |||||||||||||| ||||| ||||| | Sbjct 634 TTCCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAG 575 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| ||||| || || || || || |||| | |||||| || || | Sbjct 574 ATAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAG 515 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || |||||||||||| || ||| |||||| || ||||| | ||||| Sbjct 514 GAATACCTTCCTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 455 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | |||| || ||||| || | || |||||||| || ||||| Sbjct 454 CTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| | |||| ||||| || | ||||||||| ||||| |||||||| || | Sbjct 862 TTCCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCTG 803 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| || | ||| || |||||||| || | | |||||| || || | Sbjct 802 ACAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGGG 743 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| || || ||||||||||||||| || ||| |||| | || ||||| | || | Sbjct 742 GAATCCCCTCCTTATCTTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTCAA 683 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| | || ||||| || | ||||||||||| || ||||| Sbjct 682 CTTCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCAT 634 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || || | ||| | || || || | || ||||| || || ||||| || || | Sbjct 406 TTCCACCCCTAAGACGCAGCACCAAGTGCAAAGTCGATTCCTTCTGAATATTATAGTCTG 347 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| |||| |||||| || || || ||||| | ||||| || || | Sbjct 346 ACAGTGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTGGTCTGGAG 287 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| || |||||||| ||| || ||| |||| | |||||||| | ||||| Sbjct 286 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGATGCTTCCA 227 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||| | |||||||| || | ||||| ||||| || ||||| Sbjct 226 CTTCTAAAGTAATAGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 178 >seq173230 Length=587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 ||||||||||| || ||||||||||| ||||||| |||| | |||||| || | ||| Sbjct 1 GGAATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCGGAAGGTTCA 60 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| | ||||| || || | ||||| || || |||||||| Sbjct 61 ACTTCCAAAGTAATGGTTTTACCAGTGAGTGTTTTCACGAAAATCTGCAT 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394769025480711