Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6932 183 2e-41 seq54289 152 4e-32 seq6747 134 1e-26 seq4418 122 7e-23 seq47026 95.1 9e-15 >seq6932 Length=2340 Score = 183 bits (202), Expect = 2e-41 Identities = 480/730 (66%), Gaps = 7/730 (1%) Strand=Plus/Minus Query 27695 GGAACCGTGGTGGCCGCTTACTTTGTCGAGTGGGGTGTGTATGGTAGACAGTATCCGGCC 27754 |||| || || | ||| ||||| || || |||||||| ||| |||| | | || | Sbjct 1449 GGAAAAGTTGTAGGCGCCTACTTCGTAGAATGGGGTGTCTATCCTAGAAAATTCCCCGTG 1390 Query 27755 AACAAACTACCCATACCAAATCTGACACATTTGCTGTACGGCTTTGTGCCCATTTGCGGC 27814 | |||| ||||| ||||| || |||||||| || |||||| | || ||||||||| Sbjct 1389 GATCGTATACCTATACCTAATCTTACTCATTTGCTCTATGGCTTTATTCCAATTTGCGGC 1330 Query 27815 GGAGACGGTATCAACGATAGCCTAAAACAGATCCCCAATTC--TTTTGAGGTCCTCCAAA 27872 || || || || || || ||| ||||| ||||| || | ||| | | || || Sbjct 1329 GGTGATGGCATAAATGACAGCTTAAAAGAGATCG--AAGGCAGTTTCCAAGCACTGCAGC 1272 Query 27873 AGTCATGCTCAAACCGAGCCGACTTTAGTGTGAGCATACACGATATATGGGGCGCGCTGC 27932 ||| || ||| | ||||| | || || |||||| ||||| || | | Sbjct 1271 GGTCCTGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTAC 1212 Query 27933 AAAAACCGCAAAAGGGTGTAGAGGCGTGGAACGAGCCGTACAAGGGTAACTTTGGCCAGT 27992 ||||||| ||||| || | ||||||||||||| ||||| || ||||||||||| | Sbjct 1211 AAAAACCACAAAAAGGATTGTCTTCGTGGAACGAGCCCTACAAAGGCAACTTTGGCCAAT 1152 Query 27993 TGATGGCCATCAAACGACACCATCCCCACCTATCCATACTGCCCTCGATTGGTGGGTGGA 28052 | ||| | | |||| | || || | | || || ||||| ||||||||||||| Sbjct 1151 TAATGTCACTAAAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGA 1092 Query 28053 CTCTGAGCGATCCATTCTTTTTTATGCACGACCCGGCCAAGCGTGCCGTGTTTGTAGAGT 28112 | || |||||| ||||| ||| | ||| | ||| | | ||||| ||| Sbjct 1091 CGCTCGCCGATCCTTTCTTCTTTTTAGTTGACAAATCTAAGAGAACACGATTTGTGCAGT 1032 Query 28113 CTGTGCGCGAATTTCTGCAAACGTGGAAGTTCTTTGACGGAGTCGATTTGGACTGGGAGT 28172 | || || ||||| | ||| ||||| |||||||| || || ||| | || ||||||| Sbjct 1031 CAGTTAAGGAGTTTCTTCTAACATGGAAATTCTTTGATGGTGTTGATATCGATTGGGAGT 972 Query 28173 TTCCGGGTGGAAAGGGAGCCAACCCCGCGATCGGTAACCCCGACATTGACGCAAAAACGT 28232 | || ||||| || || || ||||| | |||||| ||| || || | | | Sbjct 971 TCCCTGGTGGTAAAGGTGCTAACCCTGATCTCGGTAGCCCAGA---AGATGGTGATTGTT 915 Query 28233 ACACCGCGCTGTTGCGCGAACTAAGATTTATGCTGGACGAGTTGGCGGaaaaaaaCGATC 28292 | || || ||| || | ||||| || ||| | | | || || | | Sbjct 914 ATGTAAGTTTGATGAAAGAATTACGTGAGATGCTCGATGAGCTCTCAGCTAAGAATGGTA 855 Query 28293 GCGTCTACCAACTAACCACCGCTATTAGCGCCGGGCATGATAAAATACAAGTGGTCAACT 28352 ||| || |||| | ||||||||| | || |||||||| ||||| || ||| Sbjct 854 AGAAATACGAATTAACTTCTGCTATTAGCTCTGGATGGGATAAAATCCAAGTTGTTGACT 795 Query 28353 ACGCTTCGGCCCAAAAACATCTGGACCACATTTTCGTTATGAGTTACGATTTTAGGGGCG 28412 ||| ||| ||||| || |||| || |||||| | |||||||| || || | ||| | Sbjct 794 ACGGCAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTATGACTTCAAGGGAG 735 Query 28413 CCTGGTCCAA 28422 ||||||| || Sbjct 734 CCTGGTCAAA 725 >seq54289 Length=786 Score = 152 bits (168), Expect = 4e-32 Identities = 183/246 (74%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 7832 TGCTCACGTTCAAGGACTGGCCGAAGAGTATAAAGCAGAAACCAAAGCAGCTTGCCGAAG 7891 ||| || |||| || ||||| || || ||||| ||||| || | || ||||| | Sbjct 92 TGCGCAGCTTCAGCGATTGGCCTCGCAGCATGAAGCAAAAACCCGAGGAACTCGCCGAGG 151 Query 7892 CTGGATTATACTACACGGGCCGCGGTGATATGACAAAGTGTTTCTACTGTGACGGGGGTC 7951 | ||||| | |||||| |||| || |||| || ||||| ||||||||||| || || | Sbjct 152 CGGGATTCTTCTACACCGGCCAGGGCGATAAAACTAAGTGCTTCTACTGTGATGGCGGGC 211 Query 7952 TCAAAGATTGGGAGGAAAACGATATACCGTGGGAGCAACACGCGCGCTGGTTTGATAAAT 8011 |||| || |||||| | |||| | ||||||||||| |||||||||||||| || | Sbjct 212 TCAAGGACTGGGAGAACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGT 271 Query 8012 GCGCATATGTCAAACTAGTCAAAGGGGAG-GAATATGTTCAGAAGGTAATTACTGAAGCG 8070 |||| || ||| | || || |||||| | || || || |||||||| || || || ||| Sbjct 272 GCGCCTACGTCCAGCTGGT-AAAGGGCCGAGAGTACGTACAGAAGGTGATCACGGAGGCG 330 Query 8071 TGCGCC 8076 |||||| Sbjct 331 TGCGCC 336 >seq6747 Length=1699 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || ||||| || || ||||| || | ||| |||||| ||||||||||| ||||| Sbjct 639 CCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 698 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || |||| ||||||||| ||||| || || || |||||||| | |||| Sbjct 699 AGAGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGGGGA 758 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| ||| ||| | | || ||||| | ||||| Sbjct 759 ATACCCTCCTTGTCTTGTATCTTGGCTTTAACATTTTCAATAGTGTCTGATGGTTCCACT 818 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | || |||||||| |||||||| Sbjct 819 TCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| |||||| |||||||||||||| || | | | ||| | || ||| Sbjct 885 ACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCTGACAAAGTGCGACCATCTTCC 944 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || |||||||| ||||| || || ||||| ||||| | || | |||||| ||||| Sbjct 945 AATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGG 1004 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || |||||| | | | || || || || || || | |||||| |||||| Sbjct 1005 ATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCAACTTCTAACGTAATTGTTTTT 1064 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| |||||||| ||||| Sbjct 1065 CCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||||||||||| ||||| || || ||| | || Sbjct 1332 AGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTGCGG 1391 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||| ||||| || || || || || ||||| ||||| | || | |||||| Sbjct 1392 CCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCT 1451 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || ||||||| | | || || || | ||||| |||| ||| Sbjct 1452 TTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGAGTA 1511 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | ||||| |||||||||||||| Sbjct 1512 ATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| || ||||| || || ||| | || | || |||||||| ||||| ||||| Sbjct 447 TCTTTTTGGATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAG 506 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || |||||||| || | ||||| ||||||||| || |||||| || ||| Sbjct 507 ATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTTGCCTTAACATTT 566 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | ||||||||||| || || ||||| || || | || || ||| Sbjct 567 TCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACA 626 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 627 AAGATCTGCAT 637 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || ||||| || |||||||| || || |||||||| || ||||||||| Sbjct 1095 CCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCAGAT 1154 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| || || || ||||| || || | ||||| || | |||| Sbjct 1155 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGGGGA 1214 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| |||||| || || | | || || || | || ||| Sbjct 1215 ATACCTTCTTTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGTTCTACC 1274 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || |||||||| || | ||| || ||||| |||||||| Sbjct 1275 TCTAAGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 1321 >seq4418 Length=3433 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||||||| |||| || || || | || |||||||||||||| ||||||||| Sbjct 632 CCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCAGAT 573 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || |||||||| || ||||| || ||||||| |||||| || | ||| Sbjct 572 AGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGAGGA 513 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| ||| || ||| | | | || || || ||||| Sbjct 512 ATACCTTCCTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACT 453 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||| || ||||||||||| ||||| Sbjct 452 TCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 406 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||||||||||||||||| ||| | || || | |||||||||||||| Sbjct 1052 TCTTTCTGAATATTGTAATCAGATAATGTTCTTCCATCTTCAAGTTGCTTACCGGCAAAA 993 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||| || | ||||| ||| || ||||| ||| ||| || ||| Sbjct 992 ATCAATCTCTGTTGGTCTGGGGGAATGCCTTCTTTGTCCTGAATTTTTGCCTTGACATTT 933 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || || |||| || || ||||| || |||| ||||| || Sbjct 932 TCTATTGTATCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACG 873 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 872 AAAATTTGCAT 862 >seq47026 Length=2159 Score = 95.1 bits (104), Expect = 9e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 7585 CCCCAAACTATGGCCCGCAACGGGTTTTATTATTTGGGTCGAAGAGACGAGGTGCGTTGC 7644 ||| || || | || | ||||| || ||||| |||| || | || || || || ||| Sbjct 1941 CCCGAATCTCTCGCAAGGAACGGCTTCTATTACCTGGGCCGCGGCGATGAAGTACGCTGC 2000 Query 7645 GCGTTTTGTAAAGTGGAAATCATGCGGTGGGTCGAAGGTGACGATCCGGAGAAGGACCAT 7704 |||||||||||||| ||||| ||| ||||| | || |||||||| | |||||||| Sbjct 2001 GCGTTTTGTAAAGTAGAAATTATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCAC 2060 Query 7705 CGGAAGTGGGCACCGCAGTGTCCGTTTCTGCG 7736 | | |||||| || ||||| || || ||||| Sbjct 2061 CAAAGGTGGGCGCCCCAGTGCCCCTTCCTGCG 2092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379486656655929