Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq6932 241 1e-58 seq6747 113 4e-20 seq4418 109 5e-19 >seq6932 Length=2340 Score = 241 bits (266), Expect = 1e-58 Identities = 780/1196 (65%), Gaps = 27/1196 (2%) Strand=Plus/Plus Query 105818 TGTTCATGGCATTGAGTAAATCGCCGTTATCGGCATCTATTTCCCAAGCAAACAAACCGC 105877 ||||||||||||| |||| ||| |||||||| || || |||||||||||||| | ||| | Sbjct 258 TGTTCATGGCATTCAGTAGATCACCGTTATCAGCGTCGATTTCCCAAGCAAAGAGACCAC 317 Query 105878 CCAGTTTGTT-TCGATCGACATATTTAACCTTGCCCAAAACAGAATCGA-CGCTATCAAA 105935 | |||||||| | || ||||||||| |||| | | ||| || || | | | ||| | Sbjct 318 CTAGTTTGTTATTTCTC-ACATATTTACCCTTTTCAATAACTGA-TCTAGCATTGTCATA 375 Query 105936 CGAAATTAAATCCNNNNNNNNNNNNNCAAAAACGTACGAAGCTTGAGCGACATTGTCA-A 105994 | | | || || || || | |||||| ||||||||||| | Sbjct 376 GGTTACAAGGTCTCCAGTTGATGGTCTGAAGACATAAGGAGCTTGGGCGACATTGTCGTA 435 Query 105995 ACG---TGTACACGTACGT-GTTCAGTTTTGTTTG-AATCTGTCGGTAATCTACGACGCC 106049 | | | ||| | | | | || || || | ||||| | |||||| || || || Sbjct 436 ATGAAATTCCCACTTGCCTTGAGCAACTTCATTCGCAATCTCCCTGTAATCAACCACTCC 495 Query 106050 GTCCTCCCAAGTGCCC--GACACGGGCCCGTTGCCGATTCCCGAAAAATAGTTGTTGCCA 106107 ||| | |||||| || |||| || || || || | | || | || ||||| | Sbjct 496 GTCTTGCCAAGTACCTTTGACA-GGTCCAGTAGC-GTTGCCTGTGAAGGGAATGTTGTCT 553 Query 106108 GTATAATTGGTCACGCCCGTCCACCCGCGGCCGTACATGGCAACTCCTACGATTATTTTG 106167 |||| ||||| ||||| || || || ||||||||||| ||||| | || || Sbjct 554 TCGTAATCATGAACGCCAGTCCAACCACGACCATACATGGCAACACCTACTACAATCTTC 613 Query 106168 TTGGGATCGACGTCTTGTTTCAGCAACGCATCGACCGCGTAATGTGTTGTGTATTTTTCT 106227 || |||| || | ||| || ||| | || || | | | |||||| |||| Sbjct 614 TTAGGATTCACTCCCTGTGCCAACAAGTATTTTACTCCGAAGTCAGATGTGTAAGTTTCC 673 Query 106228 TCGGAATTCCAACTAGGCGCATATACCGTCGTTTGATAGCCCAGATCTGTGTTCGACCAC 106287 | || | |||| |||||| || | | ||||||| || ||| || ||||| Sbjct 674 TTGGGACTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTATCATTTGACCAG 733 Query 106288 GCCCCTTTAAAATCGTAACTCATGAGGAAAATTTTGTCCAAATATTTTTGTGCGTCGTTA 106347 || || || || || |||||||| | |||||| | |||| ||| ||||| || | | Sbjct 734 GCTCCCTTGAAGTCATAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTGCCG 793 Query 106348 TAGTTTACCACGGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGGTTAATTCGTAGAAT 106407 |||| || || ||||| || | || | ||| ||||| ||||||||||| Sbjct 794 TAGTCAACAACTTGGATTTTATCCCATCCAGAGCTAATAGCAGAAGTTAATTCGTATTTC 853 Query 106408 TTGCCCGTTTGCAGTTCTAATTCGTCTAGCATGGCGCGCAACTCTTGCAACAGCACGACA 106467 || || | | | | || || ||||| | || || |||| || || ||| Sbjct 854 TTACCATTCTTAGCTGAGAGCTCATCGAGCATCTCACGTAATTCTTTCATCAAACTTACA 913 Query 106468 TATGTTTCGGCGTCGCGTTCCGCATCGCCCAAAGAAGGATTGGCCCCTTTGCCGCCTGGA 106527 || || | || ||| | || | | ||| || || ||||| || || || Sbjct 914 TAACAATCACCATC---TTCTGGGCTACCGAGATCAGGGTTAGCACCTTTACCACCAGGG 970 Query 106528 AATTCCCAATCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAAAATTCCTTTACA 106587 || |||||||| ||||| || |||||||| |||||||| | | | ||| ||||| || Sbjct 971 AACTCCCAATCGATATCAACACCATCAAAGAATTTCCATGTTAGAAGAAACTCCTTAACT 1030 Query 106588 GAATTTACAAACACGT-TTCTTTTTTCAACGTCATGCATAAAATAGAAGGGGTCTGATAG 106646 || | ||||| ||| |||| || |||| | ||| |||| || || | || Sbjct 1031 GACTGCACAAAT-CGTGTTCTCTTAGATTTGTCAACTAAAAAGAAGAAAGGATCGGCGAG 1089 Query 106647 CGTCCAACCGCCTATAGACGGAAGCACTTTTAAAT----GCGGATTTGCCAATTTAGCCG 106702 |||||| || || ||||| ||||| | || || | |||| ||| ||||| | Sbjct 1090 CGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCTTGT---TTTAGT-G 1145 Query 106703 CCATCAACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGCCTTTTTGCG 106762 ||| || || |||||||| || ||||| ||||||||||| | |||| |||||||| | Sbjct 1146 ACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCACGAAGACAATCCTTTTTGTG 1205 Query 106763 GCTTCTGTATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGCGCCCTTTGC 106822 | || |||| || ||||| |||||||| || || ||||| || || | || || | | Sbjct 1206 GTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGCTAC 1265 Query 106823 ATGATTTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGTTTATTCCAT 106882 | || |||| | || ||||| || || ||||||| || ||||| |||| Sbjct 1266 AGGACCGCTGCAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATTTATGCCAT 1325 Query 106883 CACCGCCGCAGATGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCAGCGGGACTT 106942 |||||||||| || |||||||| || || | ||||| | | ||| || | || | Sbjct 1326 CACCGCCGCAAATTGGAATAAAGCCATAGAGCAAATGAGTAAGATTAGGTATAGGTATAC 1385 Query 106943 TATCTACGGGAAAATTGCGGCCATACACGCCCCATTCGACAAAATACGCGGCGACA 106998 ||| ||||| || || | ||| || |||||||| || || || ||| | ||| Sbjct 1386 GATCCACGGGGAATTTTCTAGGATAGACACCCCATTCTACGAAGTAGGCGCCTACA 1441 >seq6747 Length=1699 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| |||| || || |||||||| ||| |||||| || Sbjct 1549 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACTCTGGAAGTGGAACCCTCT 1490 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| ||||||||||| | || ||||| Sbjct 1489 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCGCCTGATCAG 1430 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | |||||||| || || || ||||||||||| ||| | |||| || ||| Sbjct 1429 CAGCGTCTTATCTTCGCTGGAAAGCAATTGGAAGACGGCCGCACTCTTTCCGACTACAAC 1370 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||||||||||||||||||| ||| ||||||| Sbjct 1369 ATTCAAAAAGAATCTACTCTTCACTTGGTATT 1338 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||| | || || ||||| ||||| ||| ||| | || Sbjct 1093 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACGTTAGAAGTTGAAGCCTCT 1034 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| ||||||||||| | || ||||| Sbjct 1033 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 974 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||||||||| || || |||||||||||| | ||| || | ||||| || Sbjct 973 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCAGATTACAAT 914 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| || || || ||| ||||| | | | |||||||| || Sbjct 913 ATTCAGAAAGAGTCCACCCTTCACTTGGTACTCCGTCTGCGAGGAGGTAT 864 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || | || || |||||||| ||| || ||||| || Sbjct 1322 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACCTTAGAGGTAGAACCATC 1263 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | ||| ||| ||| |||||||| || | ||| ||| || Sbjct 1262 GGACACTATTGAAAACGTGAAGGCAAAGATCCAAGACAAAGAAGGTATTCCCCCAGACCA 1203 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTAT 28730 ||| || || || ||||| || |||||| |||||||| | | ||||| | |||||| Sbjct 1202 ACAAAGGCTCATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACACTAT--CTGATTAT 1145 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||||||||||| ||||||||||| || | ||||| Sbjct 1144 AACATTCAAAAGGAATCTACTCTACATTTAGTATT 1110 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || ||| | || || ||||| || || || ||| || || Sbjct 637 ATGCAGATCTTTGTTAAGACACTTACTGGGAAAACTATCACTTTGGAGGTGGAGCCATCC 578 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||| ||| || || ||||| | ||| ||| ||| Sbjct 577 GACACTATCGAAAATGTTAAGGCAAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAA 518 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | || |||||||| || ||||| ||||| ||| ||| || | || || ||| Sbjct 517 CAGCGTCTCATCTTTGCTGGTAAACAGTTGGAGGATGGCCGCACTCTGTCGGACTACAAC 458 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||||||||||||| |||| Sbjct 457 ATCCAAAAAGAATCTACTTTGCA 435 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/148 (73%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| |||||||| || | || ||||||||| | ||||| || |||||||| Sbjct 1693 AAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAACAACGTCTTATTTTCGCGGGCAAG 1634 Query 28698 CAATTGGAAGAT--TCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGC 28755 ||||| |||||| || | ||| | | || || ||||| ||||||||||||||| ||| Sbjct 1633 CAATTAGAAGATGGTCGTACACTTT--CTGACTACAACATCCAAAAAGAATCTACTTTGC 1576 Query 28756 ACATGGTATTAAGATTACGAGGAGGGAT 28783 | | ||| | | ||| |||| || || Sbjct 1575 ATTTAGTACTTCGTTTAAGAGGTGGTAT 1548 >seq4418 Length=3433 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| |||||||| ||| | || || || || || || ||| |||| |||| Sbjct 405 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTC 464 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| |||||| ||||| || || | || ||| || Sbjct 465 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCA 524 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||||| || || || |||||||| ||||||||| ||| | | |||||||| Sbjct 525 ACAGAGACTGATTTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTATCTGATTATAA 584 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||||||||||||||| ||||| Sbjct 585 TATTCAAAAAGAATCTACTTTGCAC 609 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| |||||||||||| | || || || || ||||| ||| || ||||| Sbjct 633 AATGCAAATTTTTGTAAAAACACTTACAGGCAAGACTATTACTCTTGAAGTTGAGCCTTC 692 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| |||||| || || ||||| | ||| ||| || Sbjct 693 TGATACAATTGAAAATGTTAAGGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACCA 752 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| ||||| ||||| || |||||| | |||||| || || | || || || Sbjct 753 ACAGAGGCTTATTTTTGCAGGAAAACAACTTGAAGATGGACGCACACTGTCAGACTACAA 812 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| |||||||| ||||| | ||| || || | |||| || || Sbjct 813 TATTCAAAAGGAATCTACCTTGCACTTAGTACTACGACTGAGAGGTGGAAT 863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || ||||| | || || ||||| || || ||| ||| |||| Sbjct 861 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 920 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| |||||| |||||||| || | ||| ||| || Sbjct 921 TGATACAATAGAAAATGTCAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCA 980 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||| | || ||||| || || ||| | |||||| | ||| | | ||||| || Sbjct 981 ACAGAGATTGATTTTTGCCGGTAAGCAACTTGAAGATGGAAGAACATTATCTGATTACAA 1040 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||| ||||||||||| || ||| | || | ||| | |||| || Sbjct 1041 TATTCAGAAAGAATCTACCCTTCACCTTGTTCTCAGACTCAGAGGTGG 1088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423784486691217