Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq48588 178 7e-40 >seq48588 Length=2845 Score = 178 bits (196), Expect = 7e-40 Identities = 281/400 (70%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 25906 CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAA 25965 |||||| ||| | || ||| | | |||||| | |||||| ||||| | |||||||| Sbjct 1478 CCAATCTTCATCCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAGGCATAAAA 1537 Query 25966 TAAATCTCTCGCTCTCATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAA 26024 | ||||| |||||||||||||| || || ||| ||||| |||| ||||| ||| |||| Sbjct 1538 CAGTTCTCTTGCTCTCATTTCTTCCTTACCTGTG-TTCTTCTTTAAATCTAGGAACTCAA 1596 Query 26025 AAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCAC 26084 | || || | ||||| || ||||| || || ||||| ||| | ||| ||||| Sbjct 1597 ATATGTCCGCATGCCAAGGCTCTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCAC 1656 Query 26085 CTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTG 26144 |||||||||| ||||| ||||| | ||| | ||| |||||||||| |||| ||| ||| Sbjct 1657 CTTGATCTACATATCTGGCAGTATTGTTGTACACTCTCAACATTGGCACTAGACCATTTG 1716 Query 26145 AAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATAC 26204 ||| || || || | | || | || || | ||| || || | ||| | || Sbjct 1717 AAACCCCATTAGTACCAGCTATATAAGACCCCTGGGCTCTGATGCAATGTGTATGTAAAC 1776 Query 26205 CGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTT 26264 | || ||||| || |||| ||||| |||||| | | | ||||| ||||| |||| Sbjct 1777 CTATGCCACCGGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTT 1836 Query 26265 TTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGA 26304 || ||||| ||||||| ||| | || ||||| || Sbjct 1837 CAATACTATCGTCTTTCATAGCTATAAGGAAGCAAGAGGA 1876 Score = 127 bits (140), Expect = 1e-24 Identities = 351/525 (67%), Gaps = 16/525 (3%) Strand=Plus/Plus Query 24649 ATTTT--CTTTTTCTAATGTAAATTGCTTAGCTGATACTGCTGGTTTAGTTC-TAAGATA 24705 ||||| |||| |||| ||||| || |||| | |||||||||| || | |||| || Sbjct 255 ATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAG-TA 313 Query 24706 ATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGC 24765 |||||||| ||||| || | | |||||| ||| ||||| || || |||||||| | Sbjct 314 GTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCC 373 Query 24766 AATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTGTCT 24825 | ||| | | | | | | ||| | |||||| |||| | ||| | ||| Sbjct 374 ATAGTTAGGTTTAGCAACATGTATGTTGAAAGATTGACTTTGGTCTATAAACGCTCCTCT 433 Query 24826 ATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTC 24885 ||| || || | | ||| |||||||| || || || | | |||||||| || Sbjct 434 ATCAGCGGCCATCTGTATGGACGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAATC 493 Query 24886 TTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATT-TTCTCTC-AATA-G 24942 | |||| || | || || || |||| | ||| | |||||||| || | | |||| | Sbjct 494 TCTTATTTCTTTAGGGATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAAG 553 Query 24943 ATTCAATCTCATATTCGGTGTCCAAAGATTAATTTTT-TCAAGATCTCTAATCAAGTGTT 25001 ||| | |||||| ||| | || | |||| ||| | | | || | Sbjct 554 ATT---TTTCATATCTTCATCCCATAAATCAGCCCGAGTCAA-ATCAGTCAGAAGATGAT 609 Query 25002 TATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAA--GTTTGAAGTGAA 25059 || | | | |||||||||||| || |||||||| ||| ||| ||||| || || Sbjct 610 GGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCT--TTGGTAAATATTTGATGTAAA 667 Query 25060 TGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGC 25119 |||||||||| ||||| | || || | ||||| | |||||| || |||||||| ||| Sbjct 668 TGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTTGGCATAGGTGC 727 Query 25120 TATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTT 25164 ||| ||||| ||||| | |||||||| ||| | |||| || ||| Sbjct 728 TATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTT 772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252076202507225