Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq4418 172 1e-37 seq6747 102 1e-16 >seq4418 Length=3433 Score = 172 bits (190), Expect = 1e-37 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || |||||||||| ||| ||||| | ||||| |||| || || |||||| Sbjct 870 AATTTGCATTCCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATT 811 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | || | ||| || | ||||||||| |||||||| | |||||||| Sbjct 810 GTAGTCTGACAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTG 751 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || || |||||||| ||||| | || | |||| ||| ||||| || Sbjct 750 GTCTGGGGGAATCCCCTCCTTATCTTGAATTTTTGCCTTAACATTTTCAATTGTATCAGA 691 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||||||| ||||| ||||| || ||||| || ||||||||||| ||||||||| Sbjct 690 AGGCTCAACTTCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCATT 633 Score = 154 bits (170), Expect = 3e-32 Identities = 180/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 193119 TAAGTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAA 193178 |||| | |||| | ||||||||| | || || || || || | |||| ||||| | Sbjct 1103 TAAGCAGTTTACACACCACCTCTGAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGA 1044 Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| || || ||||| ||||| ||| || | ||| || ||||||||||| |||||| Sbjct 1043 ATATTGTAATCAGATAATGTTCTTCCATCTTCAAGTTGCTTACCGGCAAAAATCAATCTC 984 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || || |||||||| || || ||||| | || | |||| || ||| Sbjct 983 TGTTGGTCTGGGGGAATGCCTTCTTTGTCCTGAATTTTTGCCTTGACATTTTCTATTGTA 924 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| || ||||| | || |||||||| || || |||||||| || || |||||| Sbjct 923 TCAGAAGCTTCTACTTCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGC 864 Query 193359 ATT 193361 ||| Sbjct 863 ATT 861 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| || | || || |||| ||||| || | || || |||||| Sbjct 414 AATTTGCATTCCACCCCTAAGACGCAGCACCAAGTGCAAAGTCGATTCCTTCTGAATATT 355 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || | || | ||| || | ||| |||||||| ||||| ||||| ||||| Sbjct 354 ATAGTCTGACAGTGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAATCTTTGTTG 295 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || ||||| || ||||| || || | || | |||| || || || || Sbjct 294 GTCTGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGA 235 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||||| ||| |||||||| || || || ||||| ||||| |||||||| Sbjct 234 TGCTTCCACTTCTAAAGTAATAGTTTTGCCAGTCAGTGTTTTAACAAAAATTTGCAT 178 >seq6747 Length=1699 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| || |||||||| | |||||| |||| ||||| || || ||||| Sbjct 1548 ATACCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCA 1607 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | ||| |||||||| || || || ||||| | | |||||||| ||| Sbjct 1608 GAAAGTGTACGACCATCTTCTAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGA 1667 Query 193251 GGTATTCCTTCTTTATCTTGTATTTT 193276 || || |||||||| ||||| ||||| Sbjct 1668 GGAATGCCTTCTTTGTCTTGGATTTT 1693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896139866349360