Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4418 168 1e-36 seq6747 134 2e-26 seq94046 118 2e-21 seq98010 91.5 2e-13 >seq4418 Length=3433 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| ||||||| |||||||| ||||| ||||| |||| ||| Sbjct 861 AATGCAAATTTTCGTGAAAACGCTGACTGGCAAAACTATCACATTGGAAGTAGAAGCTTC 920 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| || || ||||| || || ||||||||||| || ||||| || Sbjct 921 TGATACAATAGAAAATGTCAAGGCAAAAATTCAGGACAAAGAAGGCATTCCCCCAGACCA 980 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| |||||||||| |||||||||||| || |||||| ||||| ||||| ||||| || Sbjct 981 ACAGAGATTGATTTTTGCCGGTAAGCAACTTGAAGATGGAAGAACATTATCTGATTACAA 1040 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGT 156052 ||| ||||| | || ||||| | || | ||| | ||||| ||||| Sbjct 1041 TATTCAGAAAGAATCTACCCTTCACCTTGTTCTCAGACTCAGAGGTGGTGT 1091 Score = 149 bits (164), Expect = 9e-31 Identities = 142/182 (78%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||| ||||||| ||||||||||| |||||||| |||| ||| Sbjct 178 ATGCAAATTTTTGTTAAAACACTGACTGGCAAAACTATTACTTTAGAAGTGGAAGCATCT 237 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || || || || ||||| || |||||||| |||||||| ||| Sbjct 238 GACACAATCGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGACCAA 297 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||||| ||||| || |||||| | || | ||||| |||||| Sbjct 298 CAAAGATTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACACTGTCAGACTATAAT 357 Query 156003 AT 156004 || Sbjct 358 AT 359 Score = 136 bits (150), Expect = 6e-27 Identities = 140/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || ||| ||||||| || ||||| ||||| ||||| |||| ||| Sbjct 405 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTC 464 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| || || ||||| ||||| || ||||| || |||||||| || Sbjct 465 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCA 524 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| ||| |||||| ||||| || ||| | |||||| | ||| |||| |||||||| Sbjct 525 ACAGAGACTGATTTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTATCTGATTATAA 584 Query 156002 TAT 156004 ||| Sbjct 585 TAT 587 >seq6747 Length=1699 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||| | ||||||||||| ||||| |||||||| |||| ||| Sbjct 1093 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACAATTACGTTAGAAGTTGAAGCCTCT 1034 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || |||||| ||||| ||||| ||||| || || || || Sbjct 1033 GACACAATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 974 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | ||| |||||||| | |||||| | ||||| |||||||| ||| Sbjct 973 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCAGATTACAAT 914 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||| || || Sbjct 913 ATTCAGAAAGAGTCCACCCTTCACTTGGT 885 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| | || || |||||||| ||||||||||| ||| || Sbjct 865 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACTATCACATTAGAAGTGGAACCATCA 806 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || ||| || |||||||| || || || || || ||||| ||| Sbjct 805 GACACTATTGAAAATGTTAAAGCCAAGATACAAGACAAGGAGGGTATTCCCCCAGATCAA 746 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| ||||||||||| || ||| | ||| | || || || ||| Sbjct 745 CAACGTCTAATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCTCTGACTACAAT 686 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || | || || || ||| | ||||||| ||| Sbjct 685 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTCTAAGAGGAGGT 638 >seq94046 Length=398 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 18413 TCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTT 18472 || || | |||| ||||||| ||||| ||||| ||||| ||||| || ||||| | || Sbjct 133 TCCTTAGGATCTCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTT 192 Query 18473 TCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAA 18532 |||||||| || ||||||| ||| || | || || || | ||||| ||| | Sbjct 193 TCCATAGCAATTTGAAAACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAG 252 Query 18533 AATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACA 18592 || | || ||||| ||||||||||| ||||| |||| || || || || || || ||| Sbjct 253 AAACGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGCCGCAAAGAAGGCTAAGACA 312 Query 18593 TATTTAATGAAATGTTTTTC 18612 | ||| || |||||||| || Sbjct 313 TGTTTGATAAAATGTTTCTC 332 >seq98010 Length=2704 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 17869 GTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCAT 17928 ||||||||| ||||| ||||| ||||| ||||| || ||||||||||| || | |||||| Sbjct 2496 GTATTCTCCAACTTTCTTCTCAAAGAAGTTTGTTTTGCCTTCCAATGAAATAAGATTCAT 2555 Query 17929 AAAATCAAATGGATT 17943 |||||| |||||||| Sbjct 2556 AAAATCGAATGGATT 2570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729012914586800