Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6747 154 3e-32 seq4418 138 2e-27 seq94046 122 2e-22 seq296465 113 9e-20 seq173230 87.8 4e-12 >seq6747 Length=1699 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||| ||||| | ||| || || | || | |||||| ||||| ||||| Sbjct 864 ATACCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCT 923 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| |||||||| |||||||||||||| | | ||| ||||||||| Sbjct 924 GACAAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGT 983 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| |||||| |||||||| || | || || | ||| Sbjct 984 GGGATGCCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCA 1043 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||| ||||| ||||| | |||||||| ||| || ||||| Sbjct 1044 ACTTCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| ||||| || || | ||||| ||||| || || || || Sbjct 1320 ATTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCG 1379 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || |||||||| || ||||| ||||| | | ||| |||||||| Sbjct 1380 GAAAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGC 1439 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| |||||| ||||||||| |||| ||| || | ||| Sbjct 1440 GGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCC 1499 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||||||||| || ||||||| ||||||| ||| |||||||| Sbjct 1500 ACTTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 150 bits (166), Expect = 4e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365 ||||| || | |||||| ||||||||||||| ||||| | |||| || || |||||||| Sbjct 1092 ATACCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGA-ATGTTATAATC 1150 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||||| ||| || |||| |||| |||||| |||||||| || | || ||||| || || Sbjct 1151 AGATAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGG 1210 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || |||||||| ||||| || || || || || |||| || || | ||| Sbjct 1211 GGGAATACCTTCTTTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGTTC 1270 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| |||| || |||||||| || || | || |||| ||| ||||||||| Sbjct 1271 TACCTCTAAGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 1322 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| ||||||||||| || || ||||| | |||||| ||||| || ||| Sbjct 636 ATACCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCA 695 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || ||||||||||| |||| | |||||||| || Sbjct 696 GAGAGAGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGG 755 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || |||||||| || ||| ||||| |||| ||||| | ||| Sbjct 756 GGAATACCCTCCTTGTCTTGTATCTTGGCTTTAACATTTTCAATAGTGTCTGATGGTTCC 815 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || || ||||| || || | ||| || | ||| |||||||| Sbjct 816 ACTTCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | ||||||||| ||||||| ||||| ||| || || || Sbjct 408 ATTCCACCGCGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCC 467 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| ||||| ||||||||||||||||| | | |||||| || || Sbjct 468 GACAGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGG 527 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || || ||||| |||| || || | || Sbjct 528 GGAATGCCCTCCTTATCTTGGATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCC 587 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| || ||||| ||||| | ||| |||| ||| |||||||| Sbjct 588 ACCTCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 637 Score = 104 bits (114), Expect = 5e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | ||| | ||||||||| ||||||| ||||| ||| || || ||| Sbjct 1548 ATACCACCTCTTAAACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCA 1607 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || ||||| || || || || || | | |||||||| || Sbjct 1608 GAAAGTGTACGACCATCTTCTAATTGCTTGCCCGCGAAAATAAGACGTTGTTGATCTGGA 1667 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTA 192453 || || |||||||| ||||| |||||| Sbjct 1668 GGAATGCCTTCTTTGTCTTGGATTTTA 1694 >seq4418 Length=3433 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | ||||| || ||||||| ||||| |||||||||||| Sbjct 635 ATTCCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCA 576 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| || ||| |||| ||||| ||||| || || || || | ||||||||| || || Sbjct 575 GATAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGA 516 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| || ||||| ||| | ||| || | ||| Sbjct 515 GGAATACCTTCCTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCC 456 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || || || || ||||| | ||| || | ||| || |||||| Sbjct 455 ACTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 405 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| || | | || | || | |||| ||||| ||||| |||||||| Sbjct 1089 ACCACCTCTGAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGAATATTGTAATCAGA 1030 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||||| | |||| || | ||| ||||| ||||| || ||||||||||| || || || Sbjct 1029 TAATGTTCTTCCATCTTCAAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGG 970 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| || || ||||| || ||||| ||| | ||| || | |||||| Sbjct 969 AATGCCTTCTTTGTCCTGAATTTTTGCCTTGACATTTTCTATTGTATCAGAAGCTTCTAC 910 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| | || || ||||| ||||| | ||||| | || || |||||| Sbjct 909 TTCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCATT 861 >seq94046 Length=398 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165 ||||||||||| ||||| || ||||| ||| ||||||||| |||||||| ||| || Sbjct 160 ATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGCAATTTGAAAACCATAGAAG 219 Query 50166 TGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACA 50225 || ||||| | ||||| || |||| || || || || |||||| ||| Sbjct 220 CACCTGGCTTCAGTCACTTGAACCTCTTGTGAGAAACGCTCCACCAAGTTCTCATTAACA 279 Query 50226 ATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCT 50285 ||||||||||| || || ||||| ||||| || | ||| ||||||||||| || |||| Sbjct 280 ATACCATCAGAAGCCGCAAAGAAGGCTAAGACATGTTTGATAAAATGTTTCTCGCAATCT 339 Query 50286 TTTAAATTTTCCCAA 50300 ||||| | |||||| Sbjct 340 TTTAATGTCTCCCAA 354 >seq296465 Length=573 Score = 113 bits (124), Expect = 9e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| |||||||| |||| |||||| || ||||||||||| ||||| | |||| |||| Sbjct 126 CCTCATCCCTAGAAATAAGTTCATTGCTGAAAGTTAATCCGGGCATCAGCCCTCGTTTTT 185 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | | |||||||||||| ||||| || | || || ||||| ||||| || |||||| | Sbjct 186 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACCGCCGCAAAAG 245 Query 49966 CTATTATTCTTGCTCCAAACAT 49987 | || || | | ||||||| || Sbjct 246 CGATAATACGTTCTCCAAATAT 267 >seq173230 Length=587 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| ||||||||| |||| || || | ||| Sbjct 1 GGAATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCGGAAGGTTCA 60 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | |||||||||||||||||| | |||||| | || ||||||||||| Sbjct 61 ACTTCCAAAGTAATGGTTTTACCAGTGAGTGTTTTCACGAAAATCTGCATTTT 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980537944261050