Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6747 149 1e-30 seq4418 138 2e-27 seq94046 116 7e-21 seq296465 109 1e-18 seq173230 96.9 6e-15 >seq6747 Length=1699 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || ||||| || || | ||||| ||||| ||| || || || Sbjct 1320 ATTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCG 1379 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| |||||||| || ||||| || || | | ||| || ||||| Sbjct 1380 GAAAGAGTGCGGCCGTCTTCCAATTGCTTTCCAGCGAAGATAAGACGCTGCTGATCAGGC 1439 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| |||||| ||||||||| |||||||| || | ||| Sbjct 1440 GGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCC 1499 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||||||||| || ||||||| ||||||| || |||||||| Sbjct 1500 ACTTCCAGAGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1549 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||| || || | ||| || || | || | |||||| |||||| |||||| Sbjct 864 ATACCTCCTCGCAGACGGAGTACCAAGTGAAGGGTGGACTCTTTCTGAATATTGTAATCT 923 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || |||||||| ||||||||||| || | | ||| || |||||| Sbjct 924 GACAAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGT 983 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| |||||| |||||||| || || || || | ||| Sbjct 984 GGGATGCCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATTGTGTCAGAGGCTTCA 1043 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||| ||||| ||||| | |||||||| || || ||||| Sbjct 1044 ACTTCTAACGTAATTGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCAT 1093 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || ||||||||||||| ||||| || || ||| |||||||| Sbjct 1092 ATACCGCCACGAAGACGCAATACTAAATGTAGAGTAGATTCCTTTTGAATGTTATAATCA 1151 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || |||| |||||| ||||||||||| | || |||||||| || Sbjct 1152 GATAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATGAGCCTTTGTTGGTCTGGG 1211 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || || || || ||||| || || | |||| Sbjct 1212 GGAATACCTTCTTTGTCTTGGATCTTTGCCTTCACGTTTTCAATAGTGTCCGATGGTTCT 1271 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || |||| || |||||||| || || | || |||| || ||||||||| Sbjct 1272 ACCTCTAAGGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 1322 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| || |||||||| || || ||||| | |||||| |||||| || || Sbjct 636 ATACCTCCTCTTAGACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCA 695 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || |||| || |||||||||||||||| | ||||| || || Sbjct 696 GAGAGAGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGATCTGGG 755 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || |||||||| || ||| ||||| ||||| ||||| | ||| Sbjct 756 GGAATACCCTCCTTGTCTTGTATCTTGGCTTTAACATTTTCAATAGTGTCTGATGGTTCC 815 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| || || ||||| || || | ||| || | || |||||||| Sbjct 816 ACTTCTAATGTGATAGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 865 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | ||||||||| ||||||| ||||| || || || || Sbjct 408 ATTCCACCGCGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCC 467 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || ||||| |||||||||||||| || | | ||||||||| || Sbjct 468 GACAGAGTGCGGCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGG 527 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || || ||||| ||||| || || | || Sbjct 528 GGAATGCCCTCCTTATCTTGGATCTTTGCCTTAACATTTTCGATAGTGTCGGATGGCTCC 587 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| || ||||| ||||| | ||| |||| || |||||||| Sbjct 588 ACCTCCAAAGTGATAGTTTTCCCAGTAAGTGTCTTAACAAAGATCTGCAT 637 >seq4418 Length=3433 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || || || | ||||| || ||||||| ||||| |||||||||||| Sbjct 635 ATTCCACCCCTTAGACGCAGAACTAAGTGCAAAGTAGATTCTTTTTGAATATTATAATCA 576 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || ||| | || ||||| ||||| || || ||||| | |||||||||||| || Sbjct 575 GATAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAAATCAGTCTCTGTTGGTCTGGA 516 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| || ||||| ||| ||||| || | ||| Sbjct 515 GGAATACCTTCCTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCC 456 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || || || || ||||| | ||| || | || || |||||| Sbjct 455 ACTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 405 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| |||| | || | || | |||| ||||| |||||| ||||| || Sbjct 1089 ACCACCTCTGAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGAATATTGTAATCAGA 1030 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | || | | || || | ||| ||||| |||||||| |||||||||||||| || || Sbjct 1029 TAATGTTCTTCCATCTTCAAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGGGG 970 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||| || || ||||| || ||||| ||| ||||| || | |||||| Sbjct 969 AATGCCTTCTTTGTCCTGAATTTTTGCCTTGACATTTTCTATTGTATCAGAAGCTTCTAC 910 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||| | || || ||||| ||||| | ||||| | ||| || |||||| Sbjct 909 TTCCAATGTGATAGTTTTGCCAGTCAGCGTTTTCACGAAAATTTGCATT 861 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| ||||||| |||||| || || |||| || || |||||| || ||| Sbjct 863 ATTCCACCTCTCAGTCGTAGTACTAAGTGCAAGGTAGATTCCTTTTGAATATTGTAGTCT 804 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || | |||||| || |||||||| | ||||||||||| || Sbjct 803 GACAGTGTGCGTCCATCTTCAAGTTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCTGGG 744 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| ||||| || ||||| || ||||| || | || Sbjct 743 GGAATCCCCTCCTTATCTTGAATTTTTGCCTTAACATTTTCAATTGTATCAGAAGGCTCA 684 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| |||||||| || || || || | |||||| | || || |||||| Sbjct 683 ACTTCAAGAGTAATAGTCTTGCCTGTAAGTGTTTTTACAAAAATTTGCATT 633 >seq94046 Length=398 Score = 116 bits (128), Expect = 7e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 39416 AGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGC 39475 ||| ||||| || ||||| ||| ||||||||| |||||||| ||| || ||| || Sbjct 168 AGAGTACATCTCTGAATGAACATTTTCCATAGCAATTTGAAAACCATAGAAGCACCTGGC 227 Query 39476 TTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATC 39535 ||| | ||||| || |||| || || || || |||||| ||||||||||| Sbjct 228 TTCAGTCACTTGAACCTCTTGTGAGAAACGCTCCACCAAGTTCTCATTAACAATACCATC 287 Query 39536 AGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATT 39595 ||| || || ||||| ||||| |||| ||| ||||||||||| || ||||||||| | Sbjct 288 AGAAGCCGCAAAGAAGGCTAAGACATGTTTGATAAAATGTTTCTCGCAATCTTTTAATGT 347 Query 39596 TTCCCAA 39602 |||||| Sbjct 348 CTCCCAA 354 >seq296465 Length=573 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 39150 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 39209 || |||||||| |||| |||||| || ||||||||||| ||||| | |||| ||||| Sbjct 128 TCATCCCTAGAAATAAGTTCATTGCTGAAAGTTAATCCGGGCATCAGCCCTCGTTTTTTC 187 Query 39210 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCT 39269 | |||||||||||| ||||| || | || || ||||| ||||| || |||||| || Sbjct 188 AACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACCGCCGCAAAAGCG 247 Query 39270 ATTATTCTTGCTCCAAACAT 39289 || || | | ||||||| || Sbjct 248 ATAATACGTTCTCCAAATAT 267 >seq173230 Length=587 Score = 96.9 bits (106), Expect = 6e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| ||||||||| ||||| || || | ||| Sbjct 1 GGAATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCGGAAGGTTCA 60 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| | |||||||||||||||||| | |||||| | ||| ||||||||||| Sbjct 61 ACTTCCAAAGTAATGGTTTTACCAGTGAGTGTTTTCACGAAAATCTGCATTTT 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901600052273400