Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20hecuba_20flava_20[genbank_20GCA_5F900068455.1_202017- 04-25] 312,523 sequences; 212,767,244 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq48588 131 5e-25 seq99467 114 4e-20 seq99942 84.2 6e-11 >seq48588 Length=2845 Score = 131 bits (144), Expect = 5e-25 Identities = 624/977 (64%), Gaps = 40/977 (4%) Strand=Plus/Plus Query 155399 AAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCT 155458 |||||| || || | ||||||||| |||||||||| || || ||||| ||| | Sbjct 989 AAATGTATCTGCCATACCCTGAACACCAATACCGATAGGTCGGTGCCTCATATTTGAAGT 1048 Query 155459 GCTTGTCTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCA 155517 ||| |||| | || ||||| || |||||||| | || ||||||||| | || Sbjct 1049 TTTTG-CTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTGTTTAAATTTTGAGTCA 1107 Query 155518 ATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACA 155577 | ||| || | ||| |||||| | | | |||| | |||| ||| |||||| Sbjct 1108 CAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTATTATTTTCA---ACAAACT 1164 Query 155578 TACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTA 155637 | ||| | || || || || || || || || || | || |||||| | Sbjct 1165 TGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCA 1224 Query 155638 CAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTAC 155697 ||| |||| ||| || || || || || ||||| | ||| || || ||| || | Sbjct 1225 CAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTCC 1284 Query 155698 TGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAA 155757 |||| ||||||||||| |||| || ||||| || || ||||||| || || || | || Sbjct 1285 TGTTGCAAGCATCCTTATATAACATATATGGTGTACCAGTCTCCACTTGAGCTTCTATAA 1344 Query 155758 T---CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCC----TTCCGAC 155810 | ||| ||| | || | || | | |||||| ||| || ||| Sbjct 1345 TTGACTT---CCATAACTCTTGAGCTCTGA----CTTGTTTTATAAACCGTTTTTCTTCT 1397 Query 155811 TCATATTT--CATATACAGCGTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGG 155866 |||||||| |||||| |||| || ||||| || ||||| ||| || ||||| Sbjct 1398 TCATATTTGGCATATA----GTTCTTCAAATTCCTCTCCATAACAGTCAGCGAGGCCAGG 1453 Query 155867 GCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTC--CATAAAT 155924 || | || || || | || |||| || || || || || || |||||| Sbjct 1454 ACAATCATGAGGACACATGAGACTCCAATCTTCAT--CCTTTTCTACTCTTTTCATAAAC 1511 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTG 155983 | ||| ||| | ||||| || || || ||||| | || || | || ||| Sbjct 1512 AGATCTGGTATCCATAAGGCATAAAACAGTTCTCTTGCTCTCATTTCTTCCTTACCTGTG 1571 Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043 |||||| || |||| ||| || || || | ||| ||||| | || || || Sbjct 1572 -TTCTTCTTTAAATCTAGGAACTCAAATATGTCCGCATGCCAAGGCTCTAAGTAAATTGC 1630 Query 156044 AAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 ||| ||| | ||| ||||| ||||||||||| | ||||| || ||| | || Sbjct 1631 AAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTGTACAC 1690 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 | | ||| || | | |||||| ||| ||||| || || |||| || || Sbjct 1691 TCTCAACATTGGCACTAGACCATTTGAAACCCCATTAGTACCAGCTATATAAGACCCC-- 1748 Query 156161 TGAGCGAACATT--ATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCG 156218 || || || ||| |||||| || || ||||| | ||||||||||| || Sbjct 1749 TGGGCTCTGATGCAATGTGTATGTAAACCTATGCCACCGGCAGATTTAGAAATTAATGCA 1808 Query 156219 CATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAG 156278 |||| |||| ||||| ||||||||||||||| ||| |||| ||| | || || || Sbjct 1809 CATTGTTTTAAAGTATCAAAAATACCTTCAATACTATCGTCTTTCATAGCTATAAGGAAG 1868 Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATA 156338 || || | || || | ||||| | || ||| |||||||| ||||||| || Sbjct 1869 CAAGAGGAAAGCTGTGGCCTCGGTGTAGCTGCTGAGAACAGTGTAGGGCTTGCATGTGTA 1928 Query 156339 AAATACTTATTAGACAT 156355 ||||| || | ||||| Sbjct 1929 AAATATTTCTCTGACAT 1945 >seq99467 Length=3587 Score = 114 bits (126), Expect = 4e-20 Identities = 174/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| ||||||||||||||||| ||||||||| || |||||||| || ||| Sbjct 1722 TCCATAGCCTTTATTAAACGACGCTGAATGTAACCAGTTTCAGCAGTTTTTACCGCAGTA 1663 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| ||||| ||||||| ||||| || ||||| | | ||| ||| | || Sbjct 1662 TCAATGAGACCTTCACGACCTCCCATGGCGTGGAAATAAAACTCAGAAGGTGTCAAGCCG 1603 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | || | || || ||||| | | || || || ||||||| ||| | Sbjct 1602 GCAAGGTATGAATTTTCGACAAAACCTCTAGATTCTGGACCGTAATCGTC---TTTGATG 1546 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || ||||||| || || || | | ||| | || ||||||||||| ||||||||||| Sbjct 1545 AAATGTGGCAATGTTCTTTTACGAAAACCGAAAGGAATACGCTTTCCTTCAACGTTCTGT 1486 Query 302812 TGTCC 302816 || || Sbjct 1485 TGCCC 1481 >seq99942 Length=4096 Score = 84.2 bits (92), Expect = 6e-11 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||| ||| || || ||||||||||| || ||||| || || ||| || || Sbjct 3114 ATTGTCATGCGAGAAGGGATGGCATGGGGATTAATAATGATATCTGGCGTCAAGCCCTC- 3056 Query 251905 GCA-GTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGT 251962 ||| || || |||||||| | || || ||| || ||||| ||||| ||||| |||| Sbjct 3055 GCATGTAAACGGCATATCTTCTTG-TCGATACTGGATTCCACAGGTTCCTTTTTGACCGT 2997 Query 251963 GACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTAC 252022 |||||||| |||||||| ||||| ||| || ||| | || ||||| || | Sbjct 2996 GACGAGAAGCAAACTTATCCCCAATTTGTGGAATACGCACAGATCTAACGCGAATTTTGC 2937 Query 252023 AGAAGTTGTAACCATCACCGTT 252044 |||| || || || || | ||| Sbjct 2936 AGAATTTATATCCTTCGCTGTT 2915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1465924146586251